{ "type": "genome", "identifier": "GCF_000430025.1", "organism": "Flavobacterium suncheonense GH29-5 = DSM 17707", "title": "Flavobacterium suncheonense GH29-5 = DSM 17707", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000430025.1", "bioproject": "PRJNA224116", "biosample": "SAMN02440857", "wgs_master": "AUCZ00000000.1", "refseq_category": "reference genome", "taxid": "1121899", "species_taxid": "350894", "organism_name": "Flavobacterium suncheonense GH29-5 = DSM 17707", "infraspecific_name": "strain=DSM 17707", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/15", "asm_name": "ASM43002v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000430025.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/430/025/GCF_000430025.1_ASM43002v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2880663", "genome_size_ungapped": "2874963", "gc_percent": "40.500000", "replicon_count": "0", "scaffold_count": "54", "contig_count": "57", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000430025.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "2760", "protein_coding_gene_count": "2699", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-15", "dateModified": "2013-07-15", "datePublished": "2013-07-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium suncheonense GH29-5 = DSM 17707" ], "sample_taxid": [ "1121899" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.811 MB", "sample_ph_range": { "min": 68.0, "max": 68.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2880663", "Number of Sequences": "54", "Longest Sequences (bp)": "465470", "N50 (bp)": "305404", "Gap Ratio (%)": "0.197871", "GCcontent (%)": "40.5", "Number of CDSs": "2677", "Average Protein Length": "318.5", "Coding Ratio (%)": "88.8", "Number of rRNAs": "3", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium suncheonense", "strain": "strain=DSM 17707", "accession": "GCA_000430025.1", "taxid": 350894, "species_taxid": 350894, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 932, "total_fragments": 932, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium suncheonense", "strain": "strain=GH29-5", "accession": "GCA_000769835.1", "taxid": 350894, "species_taxid": 350894, "relation_to_type": "type", "validated": true, "ani": 99.9845, "matched_fragments": 907, "total_fragments": 932, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium cauense", "strain": "strain=R2A-7", "accession": "GCA_000498475.1", "taxid": 510946, "species_taxid": 510946, "relation_to_type": "type", "validated": true, "ani": 80.5094, "matched_fragments": 550, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cauense", "strain": "strain=R2A-7", "accession": "GCA_000769815.1", "taxid": 510946, "species_taxid": 510946, "relation_to_type": "type", "validated": true, "ani": 80.4718, "matched_fragments": 559, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cauense", "strain": "strain=CGMCC 1.7270", "accession": "GCA_007830385.1", "taxid": 510946, "species_taxid": 510946, "relation_to_type": "type", "validated": true, "ani": 80.4558, "matched_fragments": 553, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium saliperosum", "strain": "strain=S13", "accession": "GCA_000498515.1", "taxid": 329186, "species_taxid": 329186, "relation_to_type": "type", "validated": true, "ani": 80.3797, "matched_fragments": 549, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium saliperosum", "strain": "strain=CGMCC 1.3801", "accession": "GCA_900100625.1", "taxid": 329186, "species_taxid": 329186, "relation_to_type": "type", "validated": true, "ani": 80.3652, "matched_fragments": 558, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium limnosediminis", "strain": "strain=JC2902", "accession": "GCA_000498535.1", "taxid": 1401027, "species_taxid": 1401027, "relation_to_type": "type", "validated": true, "ani": 79.6314, "matched_fragments": 486, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium enshiense", "strain": "strain=DK69", "accession": "GCA_000498495.1", "taxid": 1341165, "species_taxid": 1341165, "relation_to_type": "type", "validated": true, "ani": 79.326, "matched_fragments": 427, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium enshiense", "strain": "strain=DK69", "accession": "GCA_000769895.1", "taxid": 1341165, "species_taxid": 1341165, "relation_to_type": "type", "validated": true, "ani": 79.3239, "matched_fragments": 433, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium supellecticarium", "strain": "strain=CC-CTC003", "accession": "GCA_004801375.1", "taxid": 2565924, "species_taxid": 2565924, "relation_to_type": "type", "validated": true, "ani": 78.2405, "matched_fragments": 287, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium amniphilum", "strain": "strain=KYPY10", "accession": "GCA_023634845.1", "taxid": 1834035, "species_taxid": 1834035, "relation_to_type": "type", "validated": true, "ani": 77.84, "matched_fragments": 207, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium channae", "strain": "strain=KSM-R2A30", "accession": "GCA_021172165.1", "taxid": 2897181, "species_taxid": 2897181, "relation_to_type": "type", "validated": true, "ani": 77.5481, "matched_fragments": 150, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 77.1088, "matched_fragments": 117, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 76.9265, "matched_fragments": 123, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 76.6891, "matched_fragments": 140, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000430025.1", "gtdb_species": "s__Flavobacterium suncheonense", "ani": 100.0, "matched_fragments": 932, "total_fragments": 932, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_000498475.1", "gtdb_species": "s__Flavobacterium cauense", "ani": 80.4803, "matched_fragments": 553, "total_fragments": 932, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900100625.1", "gtdb_species": "s__Flavobacterium saliperosum", "ani": 80.3652, "matched_fragments": 558, "total_fragments": 932, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000498535.1", "gtdb_species": "s__Flavobacterium limnosediminis", "ani": 79.6421, "matched_fragments": 485, "total_fragments": 932, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000498495.1", "gtdb_species": "s__Flavobacterium enshiense", "ani": 79.3139, "matched_fragments": 428, "total_fragments": 932, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004801375.1", "gtdb_species": "s__Flavobacterium sp004801375", "ani": 78.2405, "matched_fragments": 287, "total_fragments": 932, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004122165.1", "gtdb_species": "s__Flavobacterium sp004122165", "ani": 77.6522, "matched_fragments": 183, "total_fragments": 932, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004745595.1", "gtdb_species": "s__Flavobacterium humi", "ani": 77.4843, "matched_fragments": 201, "total_fragments": 932, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003525665.1", "gtdb_species": "s__Flavobacterium sp003525665", "ani": 76.909, "matched_fragments": 113, "total_fragments": 932, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.523, "cell_length": 0.176, "doubling_h": 1.271, "growth_tmp": 29.0, "optimum_tmp": 33.5, "optimum_ph": 7.0, "genome_size": 2879375.0, "gc_content": 40.5, "coding_genes": 3154.048, "rRNA16S_genes": 5.145, "tRNA_genes": 58.611, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.347, "range_salinity": 0.333, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "suncheonense", "GH29-5", "=", "DSM", "17707" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }