{ "type": "genome", "identifier": "GCF_000430525.1", "organism": "Prevotella corporis DSM 18810 = JCM 8529", "title": "Prevotella corporis DSM 18810 = JCM 8529", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000430525.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441145", "wgs_master": "AUME00000000.1", "refseq_category": "reference genome", "taxid": "1122981", "species_taxid": "28128", "organism_name": "Prevotella corporis DSM 18810 = JCM 8529", "infraspecific_name": "strain=DSM 18810", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/16", "asm_name": "ASM43052v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000430525.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/430/525/GCF_000430525.1_ASM43052v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2800206", "genome_size_ungapped": "2790845", "gc_percent": "44.000000", "replicon_count": "0", "scaffold_count": "84", "contig_count": "92", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000430525.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "2478", "protein_coding_gene_count": "2353", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-16", "dateModified": "2013-07-16", "datePublished": "2013-07-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Prevotella corporis DSM 18810 = JCM 8529" ], "sample_taxid": [ "1122981" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.802 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2800206", "Number of Sequences": "84", "Longest Sequences (bp)": "224786", "N50 (bp)": "60710", "Gap Ratio (%)": "0.334297", "GCcontent (%)": "44.1", "Number of CDSs": "2234", "Average Protein Length": "342.9", "Coding Ratio (%)": "82.1", "Number of rRNAs": "0", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella corporis", "strain": "strain=DSM 18810", "accession": "GCA_000430525.1", "taxid": 28128, "species_taxid": 28128, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 883, "total_fragments": 892, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella corporis", "strain": "strain=JCM 8529", "accession": "GCA_000613365.1", "taxid": 28128, "species_taxid": 28128, "relation_to_type": "type", "validated": true, "ani": 99.877, "matched_fragments": 826, "total_fragments": 892, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella colorans", "strain": "strain=DSM 100333", "accession": "GCA_003096815.1", "taxid": 1703337, "species_taxid": 1703337, "relation_to_type": "type", "validated": true, "ani": 85.7613, "matched_fragments": 103, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella brunnea", "strain": "strain=A2672", "accession": "GCA_008016795.1", "taxid": 2508867, "species_taxid": 2508867, "relation_to_type": "type", "validated": true, "ani": 84.9339, "matched_fragments": 351, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella amnii", "strain": "strain=DSM 23384", "accession": "GCA_000378745.1", "taxid": 419005, "species_taxid": 419005, "relation_to_type": "type", "validated": true, "ani": 84.9051, "matched_fragments": 100, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella amnii", "strain": "strain=JCM 14753", "accession": "GCA_000613765.1", "taxid": 419005, "species_taxid": 419005, "relation_to_type": "type", "validated": true, "ani": 84.335, "matched_fragments": 90, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella scopos", "strain": "strain=W2052", "accession": "GCA_001683355.1", "taxid": 589437, "species_taxid": 589437, "relation_to_type": "type", "validated": true, "ani": 80.9973, "matched_fragments": 137, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella vespertina", "strain": "strain=A2879", "accession": "GCA_009728485.1", "taxid": 2608404, "species_taxid": 2608404, "relation_to_type": "type", "validated": true, "ani": 80.9516, "matched_fragments": 112, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella scopos", "strain": "strain=DSM 22613", "accession": "GCA_900129535.1", "taxid": 589437, "species_taxid": 589437, "relation_to_type": "type", "validated": true, "ani": 80.8803, "matched_fragments": 134, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella scopos", "strain": "strain=W2052", "accession": "GCA_018127785.1", "taxid": 589437, "species_taxid": 589437, "relation_to_type": "type", "validated": true, "ani": 80.8362, "matched_fragments": 134, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella loescheii", "strain": "strain=DSM 19665", "accession": "GCA_000378085.1", "taxid": 840, "species_taxid": 840, "relation_to_type": "type", "validated": true, "ani": 79.7172, "matched_fragments": 56, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=ATCC 25611", "accession": "GCA_000519165.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 79.5415, "matched_fragments": 172, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=DSM 20706", "accession": "GCA_000439065.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 79.5029, "matched_fragments": 171, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella jejuni", "strain": "strain=DSM 26989", "accession": "GCA_900187995.1", "taxid": 1177574, "species_taxid": 1177574, "relation_to_type": "type", "validated": true, "ani": 79.4946, "matched_fragments": 126, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000430525.1", "gtdb_species": "s__Prevotella corporis", "ani": 100.0, "matched_fragments": 882, "total_fragments": 892, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.63", "min_intra_species_ani": "97.78", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_008016795.1", "gtdb_species": "s__Prevotella brunnea", "ani": 84.9387, "matched_fragments": 350, "total_fragments": 892, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.23", "min_intra_species_ani": "99.23", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000378745.1", "gtdb_species": "s__Prevotella amnii", "ani": 84.8273, "matched_fragments": 101, "total_fragments": 892, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.70", "min_intra_species_ani": "98.21", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.86", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_003043945.1", "gtdb_species": "s__Prevotella sp003043945", "ani": 81.1193, "matched_fragments": 95, "total_fragments": 892, "gtdb_taxonomy": 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.76", "min_intra_species_ani": "96.65", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.86", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_018127785.1", "gtdb_species": "s__Prevotella scopos", "ani": 80.8142, "matched_fragments": 135, "total_fragments": 892, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.97", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000614025.1", "gtdb_species": "s__Prevotella aurantiaca", "ani": 79.7761, "matched_fragments": 145, "total_fragments": 892, "gtdb_taxonomy": 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