{
    "type": "genome",
    "identifier": "GCF_000430545.1",
    "organism": "Tenacibaculum ovolyticum DSM 18103",
    "title": "Tenacibaculum ovolyticum DSM 18103",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000430545.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02441146",
        "wgs_master": "AUMF00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1123347",
        "species_taxid": "104270",
        "organism_name": "Tenacibaculum ovolyticum DSM 18103",
        "infraspecific_name": "strain=DSM 18103",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/07/16",
        "asm_name": "ASM43054v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000430545.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/430/545/GCF_000430545.1_ASM43054v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4124462",
        "genome_size_ungapped": "4122291",
        "gc_percent": "29.500000",
        "replicon_count": "0",
        "scaffold_count": "34",
        "contig_count": "39",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000430545.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "3726",
        "protein_coding_gene_count": "3649",
        "non_coding_gene_count": "60",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-07-16",
    "dateModified": "2013-07-16",
    "datePublished": "2013-07-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Tenacibaculum ovolyticum DSM 18103"
        ],
        "sample_taxid": [
            "1123347"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Norway"
        ],
        "sample_host_location_id": [],
        "data_size": "1.130 MB",
        "sample_ph_range": {
            "min": 5990.0,
            "max": 5990.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4124462",
        "Number of Sequences": "34",
        "Longest Sequences (bp)": "1036098",
        "N50 (bp)": "242227",
        "Gap Ratio (%)": "0.052637",
        "GCcontent (%)": "29.5",
        "Number of CDSs": "3632",
        "Average Protein Length": "331.8",
        "Coding Ratio (%)": "87.7",
        "Number of rRNAs": "8",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Tenacibaculum ovolyticum",
                "strain": "strain=DSM 18103",
                "accession": "GCA_000430545.1",
                "taxid": 104270,
                "species_taxid": 104270,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1353,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Tenacibaculum haliotis",
                "strain": "strain=KCTC 52419",
                "accession": "GCA_025215075.1",
                "taxid": 1888914,
                "species_taxid": 1888914,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.5076,
                "matched_fragments": 694,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tenacibaculum finnmarkense",
                "strain": "strain=TNO010",
                "accession": "GCA_900239495.1",
                "taxid": 2781243,
                "species_taxid": 2781243,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0275,
                "matched_fragments": 582,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tenacibaculum finnmarkense",
                "strain": "strain=TNO006",
                "accession": "GCA_900239185.1",
                "taxid": 2781243,
                "species_taxid": 2781243,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9704,
                "matched_fragments": 610,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tenacibaculum pelagium",
                "strain": "strain=S7007",
                "accession": "GCA_014062345.1",
                "taxid": 2759527,
                "species_taxid": 2759527,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9435,
                "matched_fragments": 592,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tenacibaculum aiptasiae",
                "strain": "strain=a4",
                "accession": "GCA_008806755.1",
                "taxid": 426481,
                "species_taxid": 426481,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2135,
                "matched_fragments": 637,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tenacibaculum discolor",
                "strain": "strain=DSM 18842",
                "accession": "GCA_003664185.1",
                "taxid": 361581,
                "species_taxid": 361581,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4596,
                "matched_fragments": 567,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tenacibaculum singaporense",
                "strain": "strain=DSM 106434",
                "accession": "GCA_003867015.1",
                "taxid": 2358479,
                "species_taxid": 2358479,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4202,
                "matched_fragments": 572,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tenacibaculum mesophilum",
                "strain": "strain=DSM 13764",
                "accession": "GCA_009362255.1",
                "taxid": 104268,
                "species_taxid": 104268,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3915,
                "matched_fragments": 546,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tenacibaculum mesophilum",
                "strain": "strain=DSM 13764",
                "accession": "GCA_900129475.1",
                "taxid": 104268,
                "species_taxid": 104268,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.364,
                "matched_fragments": 557,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tenacibaculum aquimarinum",
                "strain": "strain=K20-16",
                "accession": "GCA_022478115.1",
                "taxid": 2910675,
                "species_taxid": 2910675,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8857,
                "matched_fragments": 432,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tenacibaculum todarodis",
                "strain": "strain=LPB0136",
                "accession": "GCA_001889045.1",
                "taxid": 1850252,
                "species_taxid": 1850252,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.785,
                "matched_fragments": 439,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polaribacter dokdonensis",
                "strain": "strain=KCTC 12392",
                "accession": "GCA_024362345.1",
                "taxid": 326329,
                "species_taxid": 326329,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9335,
                "matched_fragments": 335,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polaribacter septentrionalilitoris",
                "strain": "strain=ANORD1",
                "accession": "GCA_009832745.1",
                "taxid": 2494657,
                "species_taxid": 2494657,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8062,
                "matched_fragments": 345,
                "total_fragments": 1355,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000430545.1",
                "gtdb_species": "s__Tenacibaculum ovolyticum",
                "ani": 100.0,
                "matched_fragments": 1353,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.63",
                "min_intra_species_ani": "97.63",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002836595.1",
                "gtdb_species": "s__Tenacibaculum sp002836595",
                "ani": 92.485,
                "matched_fragments": 1187,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001693415.1",
                "gtdb_species": "s__Tenacibaculum soleae",
                "ani": 83.4743,
                "matched_fragments": 718,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900239345.1",
                "gtdb_species": "s__Tenacibaculum dicentrarchi",
                "ani": 81.2395,
                "matched_fragments": 607,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.61",
                "min_intra_species_ani": "97.94",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCF_900239495.1",
                "gtdb_species": "s__Tenacibaculum finnmarkense",
                "ani": 81.0565,
                "matched_fragments": 580,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum",
                "ani_circumscription_radius": 96.8963,
                "mean_intra_species_ani": "98.86",
                "min_intra_species_ani": "98.40",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_900239185.1",
                "gtdb_species": "s__Tenacibaculum finnmarkense_A",
                "ani": 80.961,
                "matched_fragments": 610,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum",
                "ani_circumscription_radius": 96.8963,
                "mean_intra_species_ani": "99.00",
                "min_intra_species_ani": "98.36",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_014062345.1",
                "gtdb_species": "s__Tenacibaculum pelagium",
                "ani": 80.9575,
                "matched_fragments": 590,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900239505.1",
                "gtdb_species": "s__Tenacibaculum piscium",
                "ani": 80.4947,
                "matched_fragments": 513,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.64",
                "min_intra_species_ani": "99.33",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_008806755.1",
                "gtdb_species": "s__Tenacibaculum aiptasiae",
                "ani": 80.2139,
                "matched_fragments": 637,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003664185.1",
                "gtdb_species": "s__Tenacibaculum discolor",
                "ani": 79.4732,
                "matched_fragments": 565,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.93",
                "min_intra_species_ani": "97.89",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900105985.1",
                "gtdb_species": "s__Tenacibaculum sp900105985",
                "ani": 79.4666,
                "matched_fragments": 645,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.69",
                "min_intra_species_ani": "98.69",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001975665.1",
                "gtdb_species": "s__Polaribacter reichenbachii",
                "ani": 78.0953,
                "matched_fragments": 426,
                "total_fragments": 1355,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.97",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": 0.301,
        "doubling_h": null,
        "growth_tmp": 15.0,
        "optimum_tmp": 29.316,
        "optimum_ph": 7.363,
        "genome_size": 4112013.5,
        "gc_content": 31.23,
        "coding_genes": 3101.055,
        "rRNA16S_genes": 6.5,
        "tRNA_genes": 63.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Tenacibaculum",
        "ovolyticum",
        "DSM",
        "18103"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}