{ "type": "genome", "identifier": "GCF_000430625.1", "organism": "Aneurinibacillus terranovensis DSM 18919", "title": "Aneurinibacillus terranovensis DSM 18919", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000430625.1", "bioproject": "PRJNA224116", "biosample": "SAMN02440807", "wgs_master": "AUMJ00000000.1", "refseq_category": "reference genome", "taxid": "1121002", "species_taxid": "278991", "organism_name": "Aneurinibacillus terranovensis DSM 18919", "infraspecific_name": "strain=DSM 18919", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/16", "asm_name": "ASM43062v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000430625.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/430/625/GCF_000430625.1_ASM43062v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4247673", "genome_size_ungapped": "4238041", "gc_percent": "45.000000", "replicon_count": "0", "scaffold_count": "98", "contig_count": "118", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000430625.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "4352", "protein_coding_gene_count": "4083", "non_coding_gene_count": "89", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-16", "dateModified": "2013-07-16", "datePublished": "2013-07-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Aneurinibacillus terranovensis DSM 18919" ], "sample_taxid": [ "1121002" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica" ], "sample_host_location_id": [], "data_size": "1.219 MB", "sample_ph_range": { "min": 3560.0, "max": 3560.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4247673", "Number of Sequences": "98", "Longest Sequences (bp)": "240483", "N50 (bp)": "75911", "Gap Ratio (%)": "0.226759", "GCcontent (%)": "44.9", "Number of CDSs": "4192", "Average Protein Length": "285.2", "Coding Ratio (%)": "84.4", "Number of rRNAs": "0", "Number of tRNAs": "75", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aneurinibacillus terranovensis", "strain": "strain=DSM 18919", "accession": "GCA_000430625.1", "taxid": 278991, "species_taxid": 278991, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1369, "total_fragments": 1374, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aneurinibacillus danicus", "strain": "strain=NBRC 102444", "accession": "GCA_007991215.1", "taxid": 267746, "species_taxid": 267746, "relation_to_type": "type", "validated": true, "ani": 78.5201, "matched_fragments": 149, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aneurinibacillus tyrosinisolvens", "strain": "strain=LL-002", "accession": "GCA_001015055.1", "taxid": 1443435, "species_taxid": 1443435, "relation_to_type": "type", "validated": true, "ani": 78.0327, "matched_fragments": 195, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aneurinibacillus migulanus", "strain": "strain=NCTC 7096", "accession": "GCA_000878905.1", "taxid": 47500, "species_taxid": 47500, "relation_to_type": "type", "validated": true, "ani": 77.2515, "matched_fragments": 126, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aneurinibacillus migulanus", "strain": "strain=DSM 2895", "accession": "GCA_001274715.1", "taxid": 47500, "species_taxid": 47500, "relation_to_type": "type", "validated": true, "ani": 77.2124, "matched_fragments": 130, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aneurinibacillus thermoaerophilus", "strain": "strain=L 420-91", "accession": "GCA_900099925.1", "taxid": 143495, "species_taxid": 143495, "relation_to_type": "type", "validated": true, "ani": 77.2081, "matched_fragments": 120, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aneurinibacillus aneurinilyticus", "strain": "strain=ATCC 12856", "accession": "GCA_000466385.1", "taxid": 1391, "species_taxid": 1391, "relation_to_type": "type", "validated": true, "ani": 77.0583, "matched_fragments": 109, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000430625.1", "gtdb_species": "s__Aneurinibacillus_B terranovensis", "ani": 100.0, "matched_fragments": 1369, "total_fragments": 1374, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Aneurinibacillales;f__Aneurinibacillaceae;g__Aneurinibacillus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_007991215.1", "gtdb_species": "s__Aneurinibacillus danicus", "ani": 78.4925, "matched_fragments": 150, "total_fragments": 1374, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Aneurinibacillales;f__Aneurinibacillaceae;g__Aneurinibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.16", "min_intra_species_ani": "99.16", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001015055.1", "gtdb_species": "s__Aneurinibacillus_A tyrosinisolvens", "ani": 78.0176, "matched_fragments": 197, "total_fragments": 1374, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Aneurinibacillales;f__Aneurinibacillaceae;g__Aneurinibacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900099925.1", "gtdb_species": "s__Aneurinibacillus thermoaerophilus", "ani": 77.2125, "matched_fragments": 119, "total_fragments": 1374, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Aneurinibacillales;f__Aneurinibacillaceae;g__Aneurinibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.68", "min_intra_species_ani": "99.68", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001274715.1", "gtdb_species": "s__Aneurinibacillus migulanus", "ani": 77.1947, "matched_fragments": 131, "total_fragments": 1374, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Aneurinibacillales;f__Aneurinibacillaceae;g__Aneurinibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.46", "min_intra_species_ani": "98.76", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.91", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_000466385.1", "gtdb_species": "s__Aneurinibacillus aneurinilyticus", "ani": 77.0583, "matched_fragments": 109, "total_fragments": 1374, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Aneurinibacillales;f__Aneurinibacillaceae;g__Aneurinibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.57", "min_intra_species_ani": "99.14", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.071, "cell_length": 0.544, "doubling_h": null, "growth_tmp": 39.0, "optimum_tmp": 41.0, "optimum_ph": 5.25, "genome_size": 4243748.5, "gc_content": 44.9, "coding_genes": 3859.0, "rRNA16S_genes": 17.0, "tRNA_genes": 169.0, "gram_stain": 1.0, "sporulation": 1.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.0, "thermophilic_range_tmp": 1.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Aneurinibacillus", "terranovensis", "DSM", "18919" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }