{ "type": "genome", "identifier": "GCF_000430705.1", "organism": "Arthrobacter castelli DSM 16402", "title": "Arthrobacter castelli DSM 16402", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000430705.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441477", "wgs_master": "AUMN00000000.1", "refseq_category": "reference genome", "taxid": "1121019", "species_taxid": "271431", "organism_name": "Arthrobacter castelli DSM 16402", "infraspecific_name": "strain=DSM 16402", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/16", "asm_name": "ASM43070v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000430705.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/430/705/GCF_000430705.1_ASM43070v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4585800", "genome_size_ungapped": "4582596", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "49", "contig_count": "52", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000430705.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "4463", "protein_coding_gene_count": "4321", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-16", "dateModified": "2013-07-16", "datePublished": "2013-07-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Arthrobacter castelli DSM 16402" ], "sample_taxid": [ "1121019" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Austria" ], "sample_host_location_id": [], "data_size": "1.288 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4585800", "Number of Sequences": "49", "Longest Sequences (bp)": "496039", "N50 (bp)": "197423", "Gap Ratio (%)": "0.069868", "GCcontent (%)": "63.6", "Number of CDSs": "4410", "Average Protein Length": "303.9", "Coding Ratio (%)": "87.7", "Number of rRNAs": "4", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arthrobacter castelli", "strain": "strain=DSM 16402", "accession": "GCA_000430705.1", "taxid": 271431, "species_taxid": 271431, 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}, { "organism_name": "Pseudarthrobacter sulfonivorans", "strain": "strain=ALL", "accession": "GCA_014712225.1", "taxid": 121292, "species_taxid": 121292, "relation_to_type": "type", "validated": true, "ani": 77.3982, "matched_fragments": 212, "total_fragments": 1505, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter enclensis", "strain": "strain=NIO-1008", "accession": "GCA_001457025.1", "taxid": 993070, "species_taxid": 993070, "relation_to_type": "type", "validated": true, "ani": 77.363, "matched_fragments": 251, "total_fragments": 1505, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter luteolus", "strain": "strain=NBRC 107841", "accession": "GCA_001552075.1", "taxid": 98672, "species_taxid": 98672, "relation_to_type": "type", "validated": true, "ani": 77.3605, "matched_fragments": 248, "total_fragments": 1505, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter 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"accession": "GCA_014644515.1", "taxid": 158897, "species_taxid": 158897, "relation_to_type": "type", "validated": true, "ani": 77.2, "matched_fragments": 230, "total_fragments": 1505, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter chlorophenolicus", "strain": "strain=A6", "accession": "GCA_000022025.1", "taxid": 85085, "species_taxid": 85085, "relation_to_type": "type", "validated": true, "ani": 77.1849, "matched_fragments": 248, "total_fragments": 1505, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sedimenti", "strain": "strain=MIC A30", "accession": "GCA_011750795.2", "taxid": 2694931, "species_taxid": 2694931, "relation_to_type": "type", "validated": true, "ani": 77.1775, "matched_fragments": 214, "total_fragments": 1505, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter cupressi", "strain": "strain=CGMCC 1.10783", "accession": "GCA_900099975.1", "taxid": 1045773, 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