{ "type": "genome", "identifier": "GCF_000430785.1", "organism": "Ectobacillus panaciterrae DSM 19096", "title": "Ectobacillus panaciterrae DSM 19096", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000430785.1", "bioproject": "PRJNA224116", "biosample": "SAMN02440795", "wgs_master": "AUMR00000000.1", "refseq_category": "reference genome", "taxid": "1121093", "species_taxid": "363872", "organism_name": "Ectobacillus panaciterrae DSM 19096", "infraspecific_name": "strain=DSM 19096", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/16", "asm_name": "ASM43078v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000430785.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/430/785/GCF_000430785.1_ASM43078v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5411691", "genome_size_ungapped": "5401381", "gc_percent": "40.500000", "replicon_count": "0", "scaffold_count": "189", "contig_count": "206", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000430785.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "5541", "protein_coding_gene_count": "5142", "non_coding_gene_count": "86", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-16", "dateModified": "2013-07-16", "datePublished": "2013-07-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Ectobacillus panaciterrae DSM 19096" ], "sample_taxid": [ "1121093" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.540 MB", "sample_ph_range": { "min": 6570.0, "max": 6570.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5411691", "Number of Sequences": "189", "Longest Sequences (bp)": "305160", "N50 (bp)": "79697", "Gap Ratio (%)": "0.190513", "GCcontent (%)": "40.5", "Number of CDSs": "5280", "Average Protein Length": "261.7", "Coding Ratio (%)": "76.6", "Number of rRNAs": "7", "Number of tRNAs": "57", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ectobacillus panaciterrae", "strain": "strain=DSM 19096", "accession": "GCA_000430785.1", "taxid": 363872, "species_taxid": 363872, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1695, "total_fragments": 1707, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Ectobacillus antri", "strain": "strain=SYSU K30001", "accession": "GCA_003852715.1", "taxid": 2486280, "species_taxid": 2486280, "relation_to_type": "type", "validated": true, "ani": 78.6142, "matched_fragments": 325, "total_fragments": 1707, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus gaemokensis", "strain": "strain=KCTC 13318", "accession": "GCA_001590835.1", "taxid": 574375, "species_taxid": 574375, "relation_to_type": "type", "validated": true, "ani": 78.1026, "matched_fragments": 263, "total_fragments": 1707, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus clarus", "strain": "strain=BHP", "accession": "GCA_000746925.1", "taxid": 2338372, "species_taxid": 2338372, "relation_to_type": "type", "validated": true, "ani": 78.0909, "matched_fragments": 264, "total_fragments": 1707, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus gaemokensis", "strain": "strain=JCM 15801", "accession": "GCA_000712615.1", "taxid": 574375, "species_taxid": 574375, "relation_to_type": "type", "validated": true, "ani": 78.0881, "matched_fragments": 257, "total_fragments": 1707, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus cereus", "strain": "strain=NCTC2599", "accession": "GCA_900445355.1", "taxid": 1396, "species_taxid": 1396, "relation_to_type": "suspected-type", "validated": true, "ani": 78.074, "matched_fragments": 227, "total_fragments": 1707, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus cereus", "strain": "strain=ATCC 14579", "accession": "GCA_006094295.1", "taxid": 1396, "species_taxid": 1396, "relation_to_type": "suspected-type", "validated": true, "ani": 78.0565, "matched_fragments": 229, "total_fragments": 1707, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus cereus", "strain": "strain=ATCC 14579", "accession": "GCA_000007825.1", "taxid": 1396, "species_taxid": 1396, "relation_to_type": "suspected-type", "validated": true, "ani": 78.0524, "matched_fragments": 229, "total_fragments": 1707, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus cytotoxicus", "strain": "strain=NVH 391-98", "accession": "GCA_000017425.1", "taxid": 580165, "species_taxid": 580165, "relation_to_type": "type", "validated": true, "ani": 77.9939, "matched_fragments": 209, "total_fragments": 1707, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus cereus", "strain": "strain=FSL M8-0473", "accession": "GCA_002014665.1", "taxid": 1396, "species_taxid": 1396, "relation_to_type": "suspected-type", "validated": true, "ani": 77.9844, "matched_fragments": 229, "total_fragments": 1707, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus clarus", "strain": "strain=PS00077A", "accession": "GCA_003428195.1", "taxid": 2338372, "species_taxid": 2338372, "relation_to_type": "type", "validated": true, "ani": 77.9314, "matched_fragments": 257, "total_fragments": 1707, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cytobacillus solani", "strain": "strain=FJAT-18043", "accession": "GCA_001420595.1", "taxid": 1637975, "species_taxid": 1637975, "relation_to_type": "type", "validated": true, "ani": 77.2867, "matched_fragments": 103, "total_fragments": 1707, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Priestia megaterium", "strain": "strain=ATCC 14581", "accession": "GCA_900113355.1", "taxid": 1404, "species_taxid": 1404, "relation_to_type": "suspected-type", "validated": true, "ani": 76.9824, "matched_fragments": 138, "total_fragments": 1707, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Priestia megaterium", "strain": "strain=NCTC10342", "accession": "GCA_900445485.1", "taxid": 1404, "species_taxid": 1404, "relation_to_type": "type", "validated": true, "ani": 76.9594, "matched_fragments": 135, "total_fragments": 1707, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Priestia megaterium", "strain": "strain=NBRC 15308", "accession": "GCA_001591525.1", "taxid": 1404, "species_taxid": 1404, "relation_to_type": "type", "validated": true, "ani": 76.8054, "matched_fragments": 128, "total_fragments": 1707, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus iocasae", "strain": "strain=DSM 104297", "accession": "GCA_016909075.1", "taxid": 2291674, "species_taxid": 2291674, "relation_to_type": "type", "validated": true, "ani": 76.7139, "matched_fragments": 85, "total_fragments": 1707, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niallia circulans", "strain": "strain=NBRC 13626", "accession": "GCA_001591585.1", "taxid": 1397, "species_taxid": 1397, "relation_to_type": "suspected-type", "validated": true, "ani": 76.6079, "matched_fragments": 62, "total_fragments": 1707, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000430785.1", "gtdb_species": "s__Ectobacillus panaciterrae", "ani": 100.0, "matched_fragments": 1697, "total_fragments": 1707, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Ectobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_004138295.1", "gtdb_species": "s__Ectobacillus funiculus", "ani": 79.0952, "matched_fragments": 376, "total_fragments": 1707, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Ectobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002560985.1", "gtdb_species": "s__Bacillus_A sp002560985", "ani": 79.0406, "matched_fragments": 343, "total_fragments": 1707, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002582035.1", "gtdb_species": "s__Bacillus_A pseudomycoides_B", "ani": 78.7445, "matched_fragments": 339, "total_fragments": 1707, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003852715.1", "gtdb_species": "s__Ectobacillus antri", "ani": 78.6229, "matched_fragments": 326, "total_fragments": 1707, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Ectobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002551005.1", "gtdb_species": "s__Bacillus_A pseudomycoides_C", "ani": 78.4627, "matched_fragments": 305, "total_fragments": 1707, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002559665.1", "gtdb_species": "s__Bacillus_A cereus_AV", "ani": 78.3947, "matched_fragments": 266, "total_fragments": 1707, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000383235.1", "gtdb_species": "s__Bacillus_A sp000383235", "ani": 78.322, "matched_fragments": 260, "total_fragments": 1707, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000161455.1", "gtdb_species": "s__Bacillus_A pseudomycoides", "ani": 78.2189, "matched_fragments": 286, "total_fragments": 1707, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.62", "min_intra_species_ani": "95.81", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.85", "num_clustered_genomes": 116, "status": "-" }, { "accession": "GCF_002584535.1", "gtdb_species": "s__Bacillus_A cereus_AW", "ani": 78.201, "matched_fragments": 276, "total_fragments": 1707, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.12", "min_intra_species_ani": "98.24", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_002551815.1", "gtdb_species": "s__Bacillus_A sp002551815", "ani": 78.1329, "matched_fragments": 255, "total_fragments": 1707, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.80", "min_intra_species_ani": "99.69", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_001590835.1", "gtdb_species": "s__Bacillus_A gaemokensis", "ani": 78.1015, "matched_fragments": 263, "total_fragments": 1707, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000746925.1", "gtdb_species": "s__Bacillus_A clarus", "ani": 78.0781, "matched_fragments": 264, "total_fragments": 1707, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000007825.1", "gtdb_species": "s__Bacillus_A cereus", "ani": 78.0374, "matched_fragments": 230, "total_fragments": 1707, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 97.0513, "mean_intra_species_ani": "98.55", "min_intra_species_ani": "97.64", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.84", "num_clustered_genomes": 235, "status": "-" }, { "accession": "GCF_000017425.1", "gtdb_species": "s__Bacillus_A cytotoxicus", "ani": 77.976, "matched_fragments": 209, "total_fragments": 1707, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.49", "min_intra_species_ani": "99.12", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 21, "status": "-" }, { "accession": "GCF_001595725.1", "gtdb_species": "s__Bacillus_A thuringiensis_K", "ani": 77.8661, "matched_fragments": 244, "total_fragments": 1707, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 96.827, "mean_intra_species_ani": "99.05", "min_intra_species_ani": "98.75", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.78", "num_clustered_genomes": 20, "status": "-" }, { "accession": "GCF_017742235.1", "gtdb_species": "s__JAGHKQ01 sp017742235", "ani": 77.8441, "matched_fragments": 264, "total_fragments": 1707, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__JAGHKQ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007673305.1", "gtdb_species": "s__Bacillus_A mycoides_C", "ani": 77.6326, "matched_fragments": 221, "total_fragments": 1707, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.83", "min_intra_species_ani": "95.78", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.81", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900199725.1", "gtdb_species": "s__Cytobacillus massiliigabonensis", "ani": 77.3392, "matched_fragments": 88, "total_fragments": 1707, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003667865.1", "gtdb_species": "s__Bacillus_BQ marisflavi_A", "ani": 77.0591, "matched_fragments": 52, "total_fragments": 1707, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_B;g__Bacillus_BQ", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003184905.1", "gtdb_species": "s__Priestia sp003184905", "ani": 76.7407, "matched_fragments": 90, "total_fragments": 1707, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Priestia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016841285.1", "gtdb_species": "s__Calidifontibacillus sp016841285", "ani": 76.4072, "matched_fragments": 52, "total_fragments": 1707, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_C;f__Bacillaceae_J;g__Calidifontibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Ectobacillus", "panaciterrae", "DSM", "19096" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }