{ "type": "genome", "identifier": "GCF_000430845.1", "organism": "Chryseobacterium gregarium DSM 19109", "title": "Chryseobacterium gregarium DSM 19109", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000430845.1", "bioproject": "PRJNA224116", "biosample": "SAMN02440691", "wgs_master": "AUMU00000000.1", "refseq_category": "reference genome", "taxid": "1121287", "species_taxid": "456299", "organism_name": "Chryseobacterium gregarium DSM 19109", "infraspecific_name": "strain=DSM 19109", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/16", "asm_name": "ASM43084v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000430845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/430/845/GCF_000430845.1_ASM43084v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4439376", "genome_size_ungapped": "4438326", "gc_percent": "39.500000", "replicon_count": "0", "scaffold_count": "42", "contig_count": "43", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000430845.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "4048", "protein_coding_gene_count": "3946", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-16", "dateModified": "2013-07-16", "datePublished": "2013-07-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium gregarium DSM 19109" ], "sample_taxid": [ "1121287" ], "sample_host_organism": [], 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"matched_fragments": 735, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium taeanense", "strain": "strain=DSM 17071", "accession": "GCA_900099685.1", "taxid": 311334, "species_taxid": 311334, "relation_to_type": "type", "validated": true, "ani": 80.0095, "matched_fragments": 670, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium mucoviscidosis", "strain": "strain=VT16-26", "accession": "GCA_002177115.1", "taxid": 1945581, "species_taxid": 1945581, "relation_to_type": "type", "validated": true, "ani": 79.9601, "matched_fragments": 708, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium taichungense", "strain": "strain=DSM 17453", "accession": "GCA_900109935.1", "taxid": 295069, "species_taxid": 295069, "relation_to_type": "type", "validated": true, "ani": 79.9453, "matched_fragments": 713, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium takakiae", "strain": "strain=DSM 26898", "accession": "GCA_900129385.1", "taxid": 1302685, "species_taxid": 1302685, "relation_to_type": "type", "validated": true, "ani": 79.9424, "matched_fragments": 708, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium hagamense", "strain": "strain=NBRC 105253", "accession": "GCA_007991455.1", "taxid": 395935, "species_taxid": 395935, "relation_to_type": "type", "validated": true, "ani": 79.7048, "matched_fragments": 710, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 79.6664, "matched_fragments": 629, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium carnipullorum", "strain": "strain=DSM 25581", "accession": "GCA_900142785.1", "taxid": 1124835, "species_taxid": 1124835, "relation_to_type": "type", "validated": true, "ani": 79.4733, "matched_fragments": 594, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gleum", "strain": "strain=FDAARGOS_1103", "accession": "GCA_016766875.1", "taxid": 250, "species_taxid": 250, "relation_to_type": "type", "validated": true, "ani": 79.4401, "matched_fragments": 592, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium shigense", "strain": "strain=DSM 17126", "accession": "GCA_900156575.1", "taxid": 297244, "species_taxid": 297244, "relation_to_type": "type", "validated": true, "ani": 79.4314, "matched_fragments": 576, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gleum", "strain": "strain=ATCC 35910", "accession": "GCA_000143785.1", "taxid": 250, "species_taxid": 250, "relation_to_type": "type", "validated": true, "ani": 79.3628, "matched_fragments": 596, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium antibioticum", "strain": "strain=RP-3-3", "accession": "GCA_012927325.1", "taxid": 2728847, "species_taxid": 2728847, "relation_to_type": "type", "validated": true, "ani": 79.2729, "matched_fragments": 594, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium vrystaatense", "strain": "strain=LMG 22846", "accession": "GCA_000737765.1", "taxid": 307480, "species_taxid": 307480, "relation_to_type": "type", "validated": true, "ani": 79.1929, "matched_fragments": 581, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistella daneshvariae", "strain": "strain=H3001", "accession": "GCA_003860505.1", "taxid": 2487074, "species_taxid": 2487074, "relation_to_type": "type", "validated": true, "ani": 77.2703, "matched_fragments": 107, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium faecale", "strain": "strain=F4", "accession": "GCA_019195395.1", "taxid": 2852098, "species_taxid": 2852098, "relation_to_type": "type", "validated": true, "ani": 77.2143, "matched_fragments": 153, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium faecale", "strain": "strain=F4", "accession": "GCA_020985365.1", "taxid": 2852098, "species_taxid": 2852098, "relation_to_type": "type", "validated": true, "ani": 77.2056, "matched_fragments": 152, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Chryseobacterium", "gregarium", "DSM", "19109" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }