{ "type": "genome", "identifier": "GCF_000430865.1", "organism": "Deinococcus ficus DSM 19119", "title": "Deinococcus ficus DSM 19119", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000430865.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441464", "wgs_master": "AUMV00000000.1", "refseq_category": "na", "taxid": "1121379", "species_taxid": "317577", "organism_name": "Deinococcus ficus DSM 19119", "infraspecific_name": "strain=DSM 19119", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/16", "asm_name": "ASM43086v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000430865.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/430/865/GCF_000430865.1_ASM43086v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4144558", "genome_size_ungapped": "4144488", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "38", "contig_count": "39", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000430865.1-RS_2024_05_15", "annotation_date": "2024-05-15", "total_gene_count": "4070", "protein_coding_gene_count": "3976", "non_coding_gene_count": "72", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-16", "dateModified": "2013-07-16", "datePublished": "2013-07-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Deinococcus ficus DSM 19119" ], "sample_taxid": [ "1121379" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Taiwan" ], "sample_host_location_id": [], "data_size": "1.121 MB", "sample_ph_range": { "min": 55100.0, "max": 55100.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4144558", "Number of Sequences": "38", "Longest Sequences (bp)": "488810", "N50 (bp)": "233487", "Gap Ratio (%)": "0.001689", "GCcontent (%)": "70.0", "Number of CDSs": "4030", "Average Protein Length": "307.4", "Coding Ratio (%)": "89.7", "Number of rRNAs": "0", "Number of tRNAs": "62", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Deinococcus ficus", "strain": "strain=DSM 19119", "accession": "GCA_000430865.1", "taxid": 317577, "species_taxid": 317577, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1359, "total_fragments": 1359, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Deinococcus ficus", "strain": "strain=CC-FR2-10", "accession": "GCA_003444775.1", "taxid": 317577, "species_taxid": 317577, "relation_to_type": "type", "validated": true, "ani": 99.9992, "matched_fragments": 1355, "total_fragments": 1359, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Deinococcus actinosclerus", "strain": "strain=BM2", "accession": "GCA_001507665.1", "taxid": 1768108, "species_taxid": 1768108, "relation_to_type": "type", "validated": true, "ani": 81.6446, "matched_fragments": 700, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus seoulensis", "strain": "strain=JCM 31404", "accession": "GCA_014648115.1", "taxid": 1837379, "species_taxid": 1837379, "relation_to_type": "type", "validated": true, "ani": 81.6342, "matched_fragments": 705, "total_fragments": 1359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus 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"psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Deinococcus", "ficus", "DSM", "19119" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }