{
    "type": "genome",
    "identifier": "GCF_000430905.1",
    "organism": "Methanocorpusculum bavaricum DSM 4179",
    "title": "Methanocorpusculum bavaricum DSM 4179",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000430905.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02441137",
        "wgs_master": "AUMX00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1122230",
        "species_taxid": "71518",
        "organism_name": "Methanocorpusculum bavaricum DSM 4179",
        "infraspecific_name": "strain=DSM 4179",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/07/16",
        "asm_name": "ASM43090v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000430905.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/430/905/GCF_000430905.1_ASM43090v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "1706782",
        "genome_size_ungapped": "1702614",
        "gc_percent": "51.500000",
        "replicon_count": "0",
        "scaffold_count": "27",
        "contig_count": "33",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000430905.1-RS_2024_10_21",
        "annotation_date": "2024-10-21",
        "total_gene_count": "1772",
        "protein_coding_gene_count": "1714",
        "non_coding_gene_count": "54",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-07-16",
    "dateModified": "2013-07-16",
    "datePublished": "2013-07-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methanocorpusculum bavaricum DSM 4179"
        ],
        "sample_taxid": [
            "1122230"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany"
        ],
        "sample_host_location_id": [],
        "data_size": "0.485 MB",
        "sample_ph_range": {
            "min": 7.0,
            "max": 7.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1706782",
        "Number of Sequences": "27",
        "Longest Sequences (bp)": "324318",
        "N50 (bp)": "170993",
        "Gap Ratio (%)": "0.244202",
        "GCcontent (%)": "51.4",
        "Number of CDSs": "1710",
        "Average Protein Length": "288.9",
        "Coding Ratio (%)": "86.8",
        "Number of rRNAs": "5",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Methanocorpusculum bavaricum",
                "strain": "strain=DSM 4179",
                "accession": "GCA_000430905.1",
                "taxid": 71518,
                "species_taxid": 71518,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9999,
                "matched_fragments": 554,
                "total_fragments": 556,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Methanocorpusculum labreanum",
                "strain": "strain=Z",
                "accession": "GCA_000015765.1",
                "taxid": 83984,
                "species_taxid": 83984,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.411,
                "matched_fragments": 446,
                "total_fragments": 556,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002287215.1",
                "gtdb_species": "s__Methanocorpusculum parvum",
                "ani": 98.3944,
                "matched_fragments": 488,
                "total_fragments": 556,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanocorpusculaceae;g__Methanocorpusculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.62",
                "min_intra_species_ani": "98.46",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002498375.1",
                "gtdb_species": "s__Methanocorpusculum sp002498375",
                "ani": 88.9045,
                "matched_fragments": 423,
                "total_fragments": 556,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanocorpusculaceae;g__Methanocorpusculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.35",
                "min_intra_species_ani": "97.82",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_003315675.1",
                "gtdb_species": "s__Methanocorpusculum sp003315675",
                "ani": 85.7499,
                "matched_fragments": 387,
                "total_fragments": 556,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanocorpusculaceae;g__Methanocorpusculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000015765.1",
                "gtdb_species": "s__Methanocorpusculum labreanum",
                "ani": 85.3954,
                "matched_fragments": 444,
                "total_fragments": 556,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanocorpusculaceae;g__Methanocorpusculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002506085.1",
                "gtdb_species": "s__Methanocorpusculum sp002506085",
                "ani": 80.6502,
                "matched_fragments": 296,
                "total_fragments": 556,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanocorpusculaceae;g__Methanocorpusculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.0,
        "cell_length": 0.0,
        "doubling_h": 0.68,
        "growth_tmp": 37.15,
        "optimum_tmp": 37.0,
        "optimum_ph": 7.0,
        "genome_size": 1706782.0,
        "gc_content": 50.715,
        "coding_genes": 1773.333,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 50.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Methanocorpusculum",
        "bavaricum",
        "DSM",
        "4179"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}