{ "type": "genome", "identifier": "GCF_000439125.1", "organism": "Blautia producta ATCC 27340 = DSM 2950", "title": "Blautia producta ATCC 27340 = DSM 2950", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000439125.1", "bioproject": "PRJNA224116", "biosample": "SAMN02440793", "wgs_master": "AUUC00000000.1", "refseq_category": "na", "taxid": "1121114", "species_taxid": "33035", "organism_name": "Blautia producta ATCC 27340 = DSM 2950", "infraspecific_name": "strain=DSM 2950", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/07/19", "asm_name": "ASM43912v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000439125.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/439/125/GCF_000439125.1_ASM43912v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6088658", "genome_size_ungapped": "6080846", "gc_percent": "45.500000", "replicon_count": "0", "scaffold_count": "72", "contig_count": "80", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-28", "total_gene_count": "5685", "protein_coding_gene_count": "5475", "non_coding_gene_count": "73", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-19", "dateModified": "2013-07-19", "datePublished": "2013-07-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Blautia producta ATCC 27340 = DSM 2950" ], "sample_taxid": [ "1121114" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.723 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6088658", "Number of Sequences": "72", "Longest Sequences (bp)": "605572", "N50 (bp)": "218556", "Gap Ratio (%)": "0.128304", "GCcontent (%)": "45.7", "Number of CDSs": "5643", "Average Protein Length": "318.5", "Coding Ratio (%)": "88.6", "Number of rRNAs": "0", "Number of tRNAs": "63", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Blautia producta", "strain": "strain=DSM 2950", "accession": "GCA_000439125.1", "taxid": 33035, "species_taxid": 33035, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9999, "matched_fragments": 1987, "total_fragments": 1992, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Blautia producta", "strain": "strain=DSM 2950", "accession": "GCA_014131715.1", "taxid": 33035, "species_taxid": 33035, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9927, "matched_fragments": 1986, "total_fragments": 1992, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Blautia producta", "strain": "strain=ATCC 27340", "accession": "GCA_000373885.1", "taxid": 33035, "species_taxid": 33035, "relation_to_type": "suspected-type", "validated": true, "ani": 99.983, "matched_fragments": 1975, "total_fragments": 1992, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Blautia producta", "strain": "strain=JCM 1471", "accession": "GCA_010669205.1", "taxid": 33035, "species_taxid": 33035, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9682, "matched_fragments": 1975, "total_fragments": 1992, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Blautia coccoides", "strain": "strain=DSM 935", "accession": "GCA_004340925.1", "taxid": 1532, "species_taxid": 1532, "relation_to_type": "type", "validated": true, "ani": 98.0111, "matched_fragments": 1583, "total_fragments": 1992, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Blautia marasmi", "strain": "strain=Marseille-P2377", "accession": "GCA_900258535.1", "taxid": 1917868, "species_taxid": 1917868, "relation_to_type": "suspected-type", "validated": true, "ani": 85.1406, "matched_fragments": 1323, "total_fragments": 1992, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Diplocloster agilis", "strain": "strain=ASD5720", "accession": "GCA_019042275.1", "taxid": 2850323, "species_taxid": 2850323, "relation_to_type": "type", "validated": true, "ani": 78.7327, "matched_fragments": 108, "total_fragments": 1992, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerostipes rhamnosivorans", "strain": "strain=1y2", "accession": "GCA_005280655.1", "taxid": 1229621, "species_taxid": 1229621, "relation_to_type": "type", "validated": true, "ani": 77.6698, "matched_fragments": 51, "total_fragments": 1992, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mediterraneibacter catenae", "strain": "strain=SW178", "accession": "GCA_008691045.1", "taxid": 2594882, "species_taxid": 2594882, "relation_to_type": "type", "validated": true, "ani": 76.5069, "matched_fragments": 75, "total_fragments": 1992, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia lenta", "strain": "strain=NSJ-9", "accession": "GCA_014287435.1", "taxid": 2763061, "species_taxid": 2763061, "relation_to_type": "type", "validated": true, "ani": 76.3504, "matched_fragments": 51, "total_fragments": 1992, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900461125.1", "gtdb_species": "s__Blautia coccoides", "ani": 97.9564, "matched_fragments": 1613, "total_fragments": 1992, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.33", "min_intra_species_ani": "97.47", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.79", "num_clustered_genomes": 11, "status": "conclusive" }, { "accession": "GCF_014287615.1", "gtdb_species": "s__Blautia sp001304935", "ani": 85.838, "matched_fragments": 1322, "total_fragments": 1992, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.32", "min_intra_species_ani": "98.73", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_001689125.2", "gtdb_species": "s__Blautia pseudococcoides", "ani": 85.3436, "matched_fragments": 1172, "total_fragments": 1992, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.82", "min_intra_species_ani": "99.56", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.91", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_002270465.1", "gtdb_species": "s__Blautia hominis", "ani": 84.9961, "matched_fragments": 1269, "total_fragments": 1992, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.84", "min_intra_species_ani": "98.04", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.81", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_003481745.1", "gtdb_species": "s__Blautia stercoris", "ani": 78.2816, "matched_fragments": 205, "total_fragments": 1992, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.69", "min_intra_species_ani": "97.83", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.84", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCA_902363515.1", "gtdb_species": "s__Blautia sp000432195", "ani": 78.2697, "matched_fragments": 213, "total_fragments": 1992, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.93", "min_intra_species_ani": "98.81", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.83", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_002161285.1", "gtdb_species": "s__Blautia ornithocaccae", "ani": 78.0733, "matched_fragments": 246, "total_fragments": 1992, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.34", "min_intra_species_ani": "98.05", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.83", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_019114495.1", "gtdb_species": "s__Blautia stercoravium", "ani": 77.6597, "matched_fragments": 200, "total_fragments": 1992, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900765525.1", "gtdb_species": "s__Blautia pullicola", "ani": 77.5577, "matched_fragments": 207, "total_fragments": 1992, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.10", "min_intra_species_ani": "98.67", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.76", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_905207905.1", "gtdb_species": "s__Merdiplasma sp905207905", "ani": 76.3113, "matched_fragments": 63, "total_fragments": 1992, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Merdiplasma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.0, "cell_length": 0.0, "doubling_h": 0.255, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": 7.0, "genome_size": 6069154.333, "gc_content": 41.729, "coding_genes": 2948.5, "rRNA16S_genes": 5.0, "tRNA_genes": 65.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Blautia", "producta", "ATCC", "27340", "=", "DSM", "2950" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }