{ "type": "genome", "identifier": "GCF_000442275.2", "organism": "Litoreibacter arenae DSM 19593", "title": "Litoreibacter arenae DSM 19593", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Roseobacter SFB", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000442275.2", "bioproject": "PRJNA224116", "biosample": "SAMN02469745", "wgs_master": "AONI00000000.1", "refseq_category": "reference genome", "taxid": "1123360", "species_taxid": "491388", "organism_name": "Litoreibacter arenae DSM 19593", "infraspecific_name": "strain=DSM 19593", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Minor", "genome_rep": "Full", "seq_rel_date": "2013/07/31", "asm_name": "Thalar", "asm_submitter": "Roseobacter SFB", "gbrs_paired_asm": "GCA_000442275.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/442/275/GCF_000442275.2_Thalar", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3682761", "genome_size_ungapped": "3682324", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "14", "contig_count": "17", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000442275.2-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3646", "protein_coding_gene_count": "3553", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-07-31", "dateModified": "2013-07-31", "datePublished": "2013-07-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Litoreibacter arenae DSM 19593" ], "sample_taxid": [ "1123360" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.037 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3682651", "Number of Sequences": "13", "Longest Sequences (bp)": "1489049", "N50 (bp)": "1113248", "Gap Ratio (%)": "0.012084", "GCcontent (%)": "60.3", "Number of CDSs": "3620", "Average Protein Length": "308.0", "Coding Ratio (%)": "90.8", "Number of rRNAs": "3", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Litoreibacter arenae", "strain": "strain=DSM 19593", "accession": "GCA_000442275.2", "taxid": 491388, "species_taxid": 491388, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1222, "total_fragments": 1222, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Litoreibacter halocynthiae", "strain": "strain=DSM 29467", "accession": "GCA_004365635.1", "taxid": 1242689, "species_taxid": 1242689, "relation_to_type": "type", "validated": true, "ani": 84.2358, "matched_fragments": 785, "total_fragments": 1222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litoreibacter ascidiaceicola", "strain": "strain=DSM 100566", "accession": "GCA_900129235.1", "taxid": 1486859, "species_taxid": 1486859, "relation_to_type": "type", "validated": true, "ani": 84.0682, "matched_fragments": 769, "total_fragments": 1222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litoreibacter meonggei", "strain": "strain=DSM 29466", "accession": "GCA_003663885.1", "taxid": 1049199, "species_taxid": 1049199, "relation_to_type": "type", "validated": true, "ani": 83.1644, "matched_fragments": 739, "total_fragments": 1222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litoreibacter janthinus", "strain": "strain=DSM 26921", "accession": "GCA_900111945.1", "taxid": 670154, "species_taxid": 670154, "relation_to_type": "type", "validated": true, "ani": 80.7316, "matched_fragments": 679, "total_fragments": 1222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litoreibacter albidus", "strain": "strain=DSM 26922", "accession": "GCA_900107015.1", "taxid": 670155, "species_taxid": 670155, "relation_to_type": "type", "validated": true, "ani": 80.3509, "matched_fragments": 639, "total_fragments": 1222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litoreibacter ponti", "strain": "strain=DSM 100977", "accession": "GCA_003054285.1", "taxid": 1510457, "species_taxid": 1510457, "relation_to_type": "type", "validated": true, "ani": 79.9524, "matched_fragments": 607, "total_fragments": 1222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibacterium elongatum", "strain": "strain=DFL-43", "accession": "GCA_000590925.1", "taxid": 159346, "species_taxid": 159346, "relation_to_type": "type", "validated": true, "ani": 77.3775, "matched_fragments": 274, "total_fragments": 1222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leisingera methylohalidivorans", "strain": "strain=DSM 14336; MB2", "accession": "GCA_000511355.1", "taxid": 133924, "species_taxid": 133924, "relation_to_type": "type", "validated": true, "ani": 77.3516, "matched_fragments": 279, "total_fragments": 1222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alexandriicola marinus", "strain": "strain=LZ-14", "accession": "GCA_004000435.1", "taxid": 2081710, "species_taxid": 2081710, "relation_to_type": "type", "validated": true, "ani": 77.2216, "matched_fragments": 219, "total_fragments": 1222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger pallidus", "strain": "strain=CGMCC 1.15762", "accession": "GCA_014643635.1", "taxid": 1775170, "species_taxid": 1775170, "relation_to_type": "type", "validated": true, "ani": 77.1885, "matched_fragments": 218, "total_fragments": 1222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 77.0727, "matched_fragments": 286, "total_fragments": 1222, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter litoreus", "strain": "strain=ASW11-22", "accession": "GCA_020165855.1", "taxid": 2876714, "species_taxid": 2876714, "relation_to_type": "type", "validated": true, "ani": 77.0244, "matched_fragments": 158, "total_fragments": 1222, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000442275.2", 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28.0, "optimum_tmp": 30.0, "optimum_ph": 7.0, "genome_size": 3687750.0, "gc_content": 60.2, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Litoreibacter", "arenae", "DSM", "19593" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }