{
    "type": "genome",
    "identifier": "GCF_000452245.2",
    "organism": "Paraclostridium bifermentans ATCC 638 = DSM 14991",
    "title": "Paraclostridium bifermentans ATCC 638 = DSM 14991",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Institute for Genome Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000452245.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN01978893",
        "wgs_master": "AVNC00000000.1",
        "refseq_category": "na",
        "taxid": "1233171",
        "species_taxid": "1490",
        "organism_name": "Paraclostridium bifermentans ATCC 638 = DSM 14991",
        "infraspecific_name": "strain=ATCC 638",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Minor",
        "genome_rep": "Full",
        "seq_rel_date": "2013/08/20",
        "asm_name": "ASM45224v2",
        "asm_submitter": "Institute for Genome Sciences",
        "gbrs_paired_asm": "GCA_000452245.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/452/245/GCF_000452245.2_ASM45224v2",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3604168",
        "genome_size_ungapped": "3604168",
        "gc_percent": "28.500000",
        "replicon_count": "0",
        "scaffold_count": "22",
        "contig_count": "22",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-02-28",
        "total_gene_count": "3629",
        "protein_coding_gene_count": "3487",
        "non_coding_gene_count": "127",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-08-20",
    "dateModified": "2013-08-20",
    "datePublished": "2013-08-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paraclostridium bifermentans ATCC 638 = DSM 14991"
        ],
        "sample_taxid": [
            "1233171"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.973 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3604168",
        "Number of Sequences": "22",
        "Longest Sequences (bp)": "2254808",
        "N50 (bp)": "2254808",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "28.4",
        "Number of CDSs": "3530",
        "Average Protein Length": "294.8",
        "Coding Ratio (%)": "86.6",
        "Number of rRNAs": "20",
        "Number of tRNAs": "78",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Paraclostridium bifermentans",
                "strain": "strain=ATCC 638",
                "accession": "GCA_000452245.2",
                "taxid": 1490,
                "species_taxid": 1490,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1191,
                "total_fragments": 1191,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Paraclostridium bifermentans",
                "strain": "strain=DSM 14991",
                "accession": "GCA_019916025.1",
                "taxid": 1490,
                "species_taxid": 1490,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9894,
                "matched_fragments": 1163,
                "total_fragments": 1191,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Paraclostridium bifermentans subsp. muricolitidis",
                "strain": "strain=PAGU 1678",
                "accession": "GCA_019650315.1",
                "taxid": 2663173,
                "species_taxid": 1490,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.2677,
                "matched_fragments": 995,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Paraclostridium bifermentans",
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                "accession": "GCA_006802875.1",
                "taxid": 1490,
                "species_taxid": 1490,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.2286,
                "matched_fragments": 1048,
                "total_fragments": 1191,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Paraclostridium dentum",
                "strain": "strain=SKVG24",
                "accession": "GCA_012922555.1",
                "taxid": 2662455,
                "species_taxid": 2662455,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.2269,
                "matched_fragments": 1018,
                "total_fragments": 1191,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Paraclostridium benzoelyticum",
                "strain": "strain=JC272",
                "accession": "GCA_001006285.1",
                "taxid": 1629550,
                "species_taxid": 1629550,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.4821,
                "matched_fragments": 859,
                "total_fragments": 1191,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000452245.2",
                "gtdb_species": "s__Paraclostridium bifermentans_A",
                "ani": 100.0,
                "matched_fragments": 1191,
                "total_fragments": 1191,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Paraclostridium",
                "ani_circumscription_radius": 96.2286,
                "mean_intra_species_ani": "97.39",
                "min_intra_species_ani": "96.64",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 7,
                "status": "conclusive"
            },
            {
                "accession": "GCF_006802875.1",
                "gtdb_species": "s__Paraclostridium bifermentans",
                "ani": 96.2101,
                "matched_fragments": 1049,
                "total_fragments": 1191,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Paraclostridium",
                "ani_circumscription_radius": 96.2286,
                "mean_intra_species_ani": "97.64",
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                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 14,
                "status": "-"
            },
            {
                "accession": "GCF_001006285.1",
                "gtdb_species": "s__Paraclostridium benzoelyticum",
                "ani": 94.4866,
                "matched_fragments": 858,
                "total_fragments": 1191,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Paraclostridium",
                "ani_circumscription_radius": 95.4733,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_015668515.1",
                "gtdb_species": "s__Paraclostridium tenue",
                "ani": 83.4013,
                "matched_fragments": 685,
                "total_fragments": 1191,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Paraclostridium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.58",
                "min_intra_species_ani": "97.73",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_000953675.1",
                "gtdb_species": "s__Paraclostridium sordellii",
                "ani": 82.7105,
                "matched_fragments": 707,
                "total_fragments": 1191,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Paraclostridium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.12",
                "min_intra_species_ani": "96.78",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 59,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.222,
        "cell_length": 0.204,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 3520755.0,
        "gc_content": 28.24,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Paraclostridium",
        "bifermentans",
        "ATCC",
        "638",
        "=",
        "DSM",
        "14991"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}