{ "type": "genome", "identifier": "GCF_000454545.1", "organism": "Xanthomonas cassavae CFBP 4642", "title": "Xanthomonas cassavae CFBP 4642", "description": "na", "data type": "Genome sequencing and assembly", "organization": "French Network on Xanthomonads", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000454545.1", "bioproject": "PRJNA224116", "biosample": "SAMN02469933", "wgs_master": "ATMC00000000.1", "refseq_category": "reference genome", "taxid": "1219375", "species_taxid": "56450", "organism_name": "Xanthomonas cassavae CFBP 4642", "infraspecific_name": "strain=CFBP 4642", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/08/29", "asm_name": "20120625", "asm_submitter": "French Network on Xanthomonads", "gbrs_paired_asm": "GCA_000454545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/454/545/GCF_000454545.1_20120625", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5270756", "genome_size_ungapped": "5263056", "gc_percent": "65.000000", "replicon_count": "2", "scaffold_count": "7", "contig_count": "83", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000454545.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "4760", "protein_coding_gene_count": "4308", "non_coding_gene_count": "107", "pubmed_id": "23990580" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-08-29", "dateModified": "2013-08-29", "datePublished": "2013-08-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Xanthomonas cassavae CFBP 4642" ], "sample_taxid": [ "1219375" ], "sample_host_organism": [ "Manihot 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"organism_name": "Xanthomonas hydrangeae", "strain": "strain=LMG 31884", "accession": "GCA_905142475.1", "taxid": 2775159, "species_taxid": 2775159, "relation_to_type": "type", "validated": true, "ani": 87.0313, "matched_fragments": 1338, "total_fragments": 1754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas hortorum", "strain": "strain=CFBP2533", "accession": "GCA_012922215.1", "taxid": 56454, "species_taxid": 56454, "relation_to_type": "pathovar", "validated": true, "ani": 86.91, "matched_fragments": 1315, "total_fragments": 1754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas hortorum", "strain": "strain=CFBP 2533", "accession": "GCA_021353095.1", "taxid": 56454, "species_taxid": 56454, "relation_to_type": "pathovar", "validated": true, "ani": 86.8583, "matched_fragments": 1327, "total_fragments": 1754, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas oryzae", "strain": 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