{
    "type": "genome",
    "identifier": "GCF_000454725.1",
    "organism": "Chlamydia ibidis 10-1398/6",
    "title": "Chlamydia ibidis 10-1398/6",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Institute for Genome Sciences, University of Maryland School of Medicine",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000454725.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02222159",
        "wgs_master": "APJW00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1046581",
        "species_taxid": "1405396",
        "organism_name": "Chlamydia ibidis 10-1398/6",
        "infraspecific_name": "strain=10-1398/6",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/08/26",
        "asm_name": "ibidis.assembly",
        "asm_submitter": "Institute for Genome Sciences, University of Maryland School of Medicine",
        "gbrs_paired_asm": "GCA_000454725.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/454/725/GCF_000454725.1_ibidis.assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1146066",
        "genome_size_ungapped": "1146066",
        "gc_percent": "38.500000",
        "replicon_count": "0",
        "scaffold_count": "4",
        "contig_count": "4",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000454725.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "1001",
        "protein_coding_gene_count": "946",
        "non_coding_gene_count": "44",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-08-26",
    "dateModified": "2013-08-26",
    "datePublished": "2013-08-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Chlamydia ibidis 10-1398/6"
        ],
        "sample_taxid": [
            "1046581"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France"
        ],
        "sample_host_location_id": [],
        "data_size": "0.326 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1146066",
        "Number of Sequences": "4",
        "Longest Sequences (bp)": "478589",
        "N50 (bp)": "334575",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "38.3",
        "Number of CDSs": "953",
        "Average Protein Length": "355.1",
        "Coding Ratio (%)": "88.6",
        "Number of rRNAs": "3",
        "Number of tRNAs": "38",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Chlamydia ibidis",
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                "relation_to_type": "type",
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            },
            {
                "organism_name": "Chlamydia psittaci",
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                "species_taxid": 83554,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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            },
            {
                "organism_name": "Chlamydia caviae",
                "strain": "",
                "accession": "GCA_000007605.1",
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                "species_taxid": 83557,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2079,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chlamydia buteonis",
                "strain": "",
                "accession": "GCA_900634605.1",
                "taxid": 2494525,
                "species_taxid": 2494525,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chlamydia poikilotherma",
                "strain": "strain=S15-834K",
                "accession": "GCA_900239975.1",
                "taxid": 1967783,
                "species_taxid": 1967783,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "taxid": 1457141,
                "species_taxid": 1457141,
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                "matched_fragments": 86,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chlamydia gallinacea",
                "strain": "strain=08-1274/3",
                "accession": "GCA_000471025.2",
                "taxid": 1457153,
                "species_taxid": 1457153,
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                "matched_fragments": 80,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Chlamydia pneumoniae",
                "strain": "strain=TW-183",
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                "taxid": 83558,
                "species_taxid": 83558,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5783,
                "matched_fragments": 67,
                "total_fragments": 380,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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                "accession": "GCF_000454725.1",
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                "mean_intra_species_ani": "100.00",
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                "mean_intra_species_ani": "99.65",
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                "num_clustered_genomes": 66,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;g__Chlamydophila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
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            },
            {
                "accession": "GCF_000009945.1",
                "gtdb_species": "s__Chlamydophila felis",
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                "gtdb_taxonomy": "d__Bacteria;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;g__Chlamydophila",
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                "mean_intra_species_ani": "N/A",
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            },
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                "mean_intra_species_ani": "N/A",
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            },
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            },
            {
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        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": 0.875,
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    "_genome_taxon": [
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}