{ "type": "genome", "identifier": "GCF_000463155.2", "organism": "Siccibacter turicensis LMG 23730", "title": "Siccibacter turicensis LMG 23730", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Nottingham Trent University, UK", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000463155.2", "bioproject": "PRJNA224116", "biosample": "SAMN02318531", "wgs_master": "AWFZ00000000.1", "refseq_category": "na", "taxid": "1388748", "species_taxid": "357233", "organism_name": "Siccibacter turicensis LMG 23730", "infraspecific_name": "strain=LMG23730T", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Minor", "genome_rep": "Full", "seq_rel_date": "2013/08/30", "asm_name": "CroZurLMG23730T_1.0", "asm_submitter": "Nottingham Trent University, UK", "gbrs_paired_asm": "GCA_000463155.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/463/155/GCF_000463155.2_CroZurLMG23730T_1.0", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4236729", "genome_size_ungapped": "4236288", "gc_percent": "58.000000", "replicon_count": "0", "scaffold_count": "74", "contig_count": "74", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-29", "total_gene_count": "4064", "protein_coding_gene_count": "3904", "non_coding_gene_count": "106", "pubmed_id": "24072872" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-08-30", "dateModified": "2013-08-30", "datePublished": "2013-08-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Siccibacter turicensis LMG 23730" ], "sample_taxid": [ "1388748" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.196 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4236729", "Number of Sequences": "74", "Longest Sequences (bp)": "1124355", "N50 (bp)": "497652", "Gap Ratio (%)": "0.010409", "GCcontent (%)": "57.8", "Number of CDSs": "3949", "Average Protein Length": "313.3", "Coding Ratio (%)": "87.6", "Number of rRNAs": "3", "Number of tRNAs": "72", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Siccibacter turicensis", "strain": "strain=LMG 23730", "accession": "GCA_000463155.2", "taxid": 357233, "species_taxid": 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"type", "validated": true, "ani": 81.844, "matched_fragments": 907, "total_fragments": 1396, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter malonaticus", "strain": "strain=LMG 23826", "accession": "GCA_000409305.1", "taxid": 413503, "species_taxid": 413503, "relation_to_type": "type", "validated": true, "ani": 81.7895, "matched_fragments": 907, "total_fragments": 1396, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter malonaticus", "strain": "strain=LMG 23826", "accession": "GCA_001277215.2", "taxid": 413503, "species_taxid": 413503, "relation_to_type": "type", "validated": true, "ani": 81.7557, "matched_fragments": 940, "total_fragments": 1396, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter sakazakii", "strain": "strain=ATCC 29544", "accession": "GCA_001971035.1", "taxid": 28141, "species_taxid": 28141, "relation_to_type": "type", "validated": true, "ani": 81.5371, "matched_fragments": 850, "total_fragments": 1396, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter dublinensis subsp. dublinensis", "strain": "strain=LMG 23823", "accession": "GCA_000409225.1", "taxid": 413498, "species_taxid": 413497, "relation_to_type": "type", "validated": true, "ani": 81.4936, "matched_fragments": 923, "total_fragments": 1396, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter muytjensii", "strain": "strain=ATCC 51329", "accession": "GCA_001277195.1", "taxid": 413501, "species_taxid": 413501, "relation_to_type": "type", "validated": true, "ani": 81.4442, "matched_fragments": 891, "total_fragments": 1396, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter muytjensii", "strain": "strain=ATCC 51329", "accession": "GCA_000409285.1", "taxid": 413501, "species_taxid": 413501, "relation_to_type": "type", "validated": true, "ani": 81.4371, "matched_fragments": 879, "total_fragments": 1396, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 81.3618, "matched_fragments": 856, "total_fragments": 1396, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter asburiae", "strain": "strain=FDAARGOS_892", "accession": "GCA_016027695.1", "taxid": 61645, "species_taxid": 61645, "relation_to_type": "type", "validated": true, "ani": 81.3273, "matched_fragments": 804, "total_fragments": 1396, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter asburiae", "strain": "strain=ATCC 35953", "accession": "GCA_001521715.1", "taxid": 61645, "species_taxid": 61645, "relation_to_type": "type", "validated": true, "ani": 81.2983, "matched_fragments": 810, "total_fragments": 1396, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 81.2867, "matched_fragments": 831, "total_fragments": 1396, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei", "strain": "strain=FDAARGOS 1433", "accession": "GCA_019048245.1", "taxid": 158836, "species_taxid": 158836, "relation_to_type": "suspected-type", "validated": true, "ani": 81.2076, "matched_fragments": 837, "total_fragments": 1396, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pluralibacter gergoviae", "strain": "strain=NBRC 105706", "accession": "GCA_001598855.1", "taxid": 61647, "species_taxid": 61647, "relation_to_type": "type", "validated": true, "ani": 81.1995, "matched_fragments": 802, "total_fragments": 1396, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Franconibacter helveticus", "strain": "strain=LMG 23732", "accession": "GCA_000463115.2", "taxid": 357240, "species_taxid": 357240, "relation_to_type": "type", "validated": true, "ani": 81.1407, "matched_fragments": 827, "total_fragments": 1396, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Franconibacter helveticus", "strain": "strain=513", "accession": "GCA_000485945.1", "taxid": 357240, "species_taxid": 357240, "relation_to_type": "type", "validated": true, "ani": 81.0844, "matched_fragments": 771, "total_fragments": 1396, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 80.8607, "matched_fragments": 810, "total_fragments": 1396, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yokenella regensburgei", 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"GCF_002208095.1", "gtdb_species": "s__Enterobacter cloacae_M", "ani": 81.3747, "matched_fragments": 832, "total_fragments": 1396, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 96.7528, "mean_intra_species_ani": "98.28", "min_intra_species_ani": "96.89", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.85", "num_clustered_genomes": 84, "status": "-" }, { "accession": "GCF_007570865.1", "gtdb_species": "s__Atlantibacter subterranea", "ani": 81.2927, "matched_fragments": 794, "total_fragments": 1396, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Atlantibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.55", "min_intra_species_ani": "98.44", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 8, "status": "-" }, { "accession": 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null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Siccibacter", "turicensis", "LMG", "23730" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }