{ "type": "genome", "identifier": "GCF_000467145.1", "organism": "Vibrio alginolyticus NBRC 15630 = ATCC 17749", "title": "Vibrio alginolyticus NBRC 15630 = ATCC 17749", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000467145.1", "bioproject": "PRJNA224116", "biosample": "SAMD00041824", "wgs_master": "BATK00000000.1", "refseq_category": "na", "taxid": "1219076", "species_taxid": "663", "organism_name": "Vibrio alginolyticus NBRC 15630 = ATCC 17749", "infraspecific_name": "strain=NBRC 15630", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/09/13", "asm_name": "ASM46714v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_000467145.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/467/145/GCF_000467145.1_ASM46714v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5049668", "genome_size_ungapped": "5049668", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "76", "contig_count": "76", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2023-08-06", "total_gene_count": "4573", "protein_coding_gene_count": "4475", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-09-13", "dateModified": "2013-09-13", "datePublished": "2013-09-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio alginolyticus NBRC 15630 = ATCC 17749" ], "sample_taxid": [ "1219076" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.445 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5049668", "Number of Sequences": "76", "Longest Sequences (bp)": "454207", "N50 (bp)": "221121", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.6", "Number of CDSs": "4481", "Average Protein Length": "322.6", "Coding Ratio (%)": "85.9", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio alginolyticus", "strain": "strain=NBRC 15630", "accession": "GCA_000467145.1", "taxid": 663, 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