{ "type": "genome", "identifier": "GCF_000467875.1", "organism": "Prevotella disiens JCM 6334 = ATCC 29426", "title": "Prevotella disiens JCM 6334 = ATCC 29426", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Washington University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000467875.1", "bioproject": "PRJNA224116", "biosample": "SAMN02436748", "wgs_master": "AWUY00000000.1", "refseq_category": "na", "taxid": "1235811", "species_taxid": "28130", "organism_name": "Prevotella disiens JCM 6334 = ATCC 29426", "infraspecific_name": "strain=ATCC 29426", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/09/16", "asm_name": "ASM46787v1", "asm_submitter": "Washington University", "gbrs_paired_asm": "GCA_000467875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/467/875/GCF_000467875.1_ASM46787v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2698537", "genome_size_ungapped": "2684937", "gc_percent": "39.500000", "replicon_count": "0", "scaffold_count": "261", "contig_count": "397", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000467875.1-RS_2025_01_08", "annotation_date": "2025-01-08", "total_gene_count": "2460", "protein_coding_gene_count": "2263", "non_coding_gene_count": "45", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-09-16", "dateModified": "2013-09-16", "datePublished": "2013-09-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Prevotella disiens JCM 6334 = ATCC 29426" ], "sample_taxid": [ "1235811" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.766 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2698537", "Number of Sequences": "261", "Longest Sequences (bp)": "171097", "N50 (bp)": "31181", "Gap Ratio (%)": "0.503977", "GCcontent (%)": "39.6", "Number of CDSs": "2101", "Average Protein Length": "340.5", "Coding Ratio (%)": "79.5", "Number of rRNAs": "2", "Number of tRNAs": "38", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella disiens", "strain": "strain=ATCC 29426", "accession": "GCA_000467875.1", "taxid": 28130, "species_taxid": 28130, 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310, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella buccae", "strain": "strain=ATCC 33574", "accession": "GCA_000184945.1", "taxid": 28126, "species_taxid": 28126, "relation_to_type": "type", "validated": true, "ani": 80.6554, "matched_fragments": 79, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=ATCC 25611", "accession": "GCA_001953955.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 80.2662, "matched_fragments": 341, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=DSM 20706", "accession": "GCA_000439065.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 80.2272, "matched_fragments": 329, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=ATCC 25611", "accession": "GCA_000519165.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 80.1515, "matched_fragments": 331, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella falsenii", "strain": "strain=JCM 15124", "accession": "GCA_000613945.1", "taxid": 515414, "species_taxid": 515414, "relation_to_type": "type", "validated": true, "ani": 79.9813, "matched_fragments": 327, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella aurantiaca", "strain": "strain=JCM 15754", "accession": "GCA_000614025.1", "taxid": 596085, "species_taxid": 596085, "relation_to_type": "type", "validated": true, "ani": 79.7877, "matched_fragments": 311, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella scopos", "strain": "strain=W2052", "accession": "GCA_001683355.1", "taxid": 589437, "species_taxid": 589437, "relation_to_type": "type", "validated": true, "ani": 78.9793, "matched_fragments": 152, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000613345.1", "gtdb_species": "s__Prevotella disiens", "ani": 99.825, "matched_fragments": 745, "total_fragments": 777, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.74", "min_intra_species_ani": "97.99", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.82", "num_clustered_genomes": 7, "status": "conclusive" }, { "accession": "GCF_900155655.1", "gtdb_species": "s__Prevotella ihumii", "ani": 82.6932, "matched_fragments": 308, "total_fragments": 777, 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.61", "min_intra_species_ani": "96.13", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.83", "num_clustered_genomes": 34, "status": "-" }, { "accession": "GCF_000613945.1", "gtdb_species": "s__Prevotella falsenii", "ani": 79.9813, "matched_fragments": 327, "total_fragments": 777, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000614025.1", "gtdb_species": "s__Prevotella aurantiaca", "ani": 79.7873, "matched_fragments": 311, "total_fragments": 777, "gtdb_taxonomy": 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