{ "type": "genome", "identifier": "GCF_000468495.1", "organism": "Megalodesulfovibrio gigas DSM 1382 = ATCC 19364", "title": "Megalodesulfovibrio gigas DSM 1382 = ATCC 19364", "description": "na", "data type": "Genome sequencing and assembly", "organization": "ITQB Antonio Xavier - UNL", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000468495.1", "bioproject": "PRJNA224116", "biosample": "SAMN02603429", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1121448", "species_taxid": "879", "organism_name": "Megalodesulfovibrio gigas DSM 1382 = ATCC 19364", "infraspecific_name": "strain=ATCC 19364", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/09/18", "asm_name": "ASM46849v1", "asm_submitter": "ITQB Antonio Xavier - UNL", "gbrs_paired_asm": "GCA_000468495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/468/495/GCF_000468495.1_ASM46849v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3796022", "genome_size_ungapped": "3769021", "gc_percent": "64.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000468495.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3409", "protein_coding_gene_count": "3326", "non_coding_gene_count": "56", "pubmed_id": "23974026" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-09-18", "dateModified": "2013-09-18", "datePublished": "2013-09-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Megalodesulfovibrio gigas DSM 1382 = ATCC 19364" ], "sample_taxid": [ "1121448" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Etang de Berre" ], "sample_host_location_id": [], "data_size": "1.042 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3795922", "Number of Sequences": "2", "Longest Sequences (bp)": "3693899", "N50 (bp)": "3693899", "Gap Ratio (%)": "0.713977", "GCcontent (%)": "63.8", "Number of CDSs": "3358", "Average Protein Length": "335.7", "Coding Ratio (%)": "89.1", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Megalodesulfovibrio gigas", "strain": "strain=ATCC 19364", "accession": "GCA_000468495.1", 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77.2171, "matched_fragments": 252, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupidesulfovibrio termitidis", "strain": "strain=HI1", "accession": "GCA_000504305.1", "taxid": 42252, "species_taxid": 42252, "relation_to_type": "type", "validated": true, "ani": 77.182, "matched_fragments": 268, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio vulgaris", "strain": "strain=Hildenborough", "accession": "GCA_000195755.1", "taxid": 881, "species_taxid": 881, "relation_to_type": "type", "validated": true, "ani": 77.0435, "matched_fragments": 123, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio vulgaris", "strain": "strain=Hildenborough", "accession": "GCA_902167245.1", "taxid": 881, "species_taxid": 881, "relation_to_type": "type", "validated": true, "ani": 77.0145, "matched_fragments": 123, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio piger", "strain": "strain=ATCC 29098", "accession": "GCA_000156375.1", "taxid": 901, "species_taxid": 901, "relation_to_type": "suspected-type", "validated": true, "ani": 76.9718, "matched_fragments": 165, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio porci", "strain": "strain=PG-178-WT-4", "accession": "GCA_009696265.1", "taxid": 2605782, "species_taxid": 2605782, "relation_to_type": "type", "validated": true, "ani": 76.875, "matched_fragments": 149, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bilophila wadsworthia", "strain": "strain=ATCC 49260", "accession": "GCA_000701705.1", "taxid": 35833, "species_taxid": 35833, "relation_to_type": "type", "validated": true, "ani": 76.4676, "matched_fragments": 83, "total_fragments": 1265, "ani_threshold": 95, "status": "below_threshold" } ], 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