{
    "type": "genome",
    "identifier": "GCF_000468535.1",
    "organism": "Peptoniphilus mikwangii",
    "title": "Peptoniphilus mikwangii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "KCOM and Dental School of Chosun University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000468535.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02469576",
        "wgs_master": "AUQY00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1354300",
        "species_taxid": "1354300",
        "organism_name": "Peptoniphilus mikwangii",
        "infraspecific_name": "strain=ChDC B134",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/09/18",
        "asm_name": "ASM46853v1",
        "asm_submitter": "KCOM and Dental School of Chosun University",
        "gbrs_paired_asm": "GCA_000468535.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/468/535/GCF_000468535.1_ASM46853v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1499757",
        "genome_size_ungapped": "1499757",
        "gc_percent": "31.000000",
        "replicon_count": "0",
        "scaffold_count": "5",
        "contig_count": "5",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000468535.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "1472",
        "protein_coding_gene_count": "1394",
        "non_coding_gene_count": "63",
        "pubmed_id": "24158551"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-09-18",
    "dateModified": "2013-09-18",
    "datePublished": "2013-09-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Peptoniphilus mikwangii"
        ],
        "sample_taxid": [
            "1354300"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea"
        ],
        "sample_host_location_id": [],
        "data_size": "0.411 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1499757",
        "Number of Sequences": "5",
        "Longest Sequences (bp)": "829742",
        "N50 (bp)": "829742",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "31.0",
        "Number of CDSs": "1409",
        "Average Protein Length": "317.2",
        "Coding Ratio (%)": "89.4",
        "Number of rRNAs": "12",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Peptoniphilus mikwangii",
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                "species_taxid": 1354300,
                "relation_to_type": "type",
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                "total_fragments": 497,
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            },
            {
                "organism_name": "Peptoniphilus asaccharolyticus",
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                "species_taxid": 1258,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Peptoniphilus asaccharolyticus",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerosphaera aminiphila",
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                "species_taxid": 1120994,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 116,
                "total_fragments": 497,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerosphaera massiliensis",
                "strain": "strain=Marseille-P4592",
                "accession": "GCA_902167235.1",
                "taxid": 2040296,
                "species_taxid": 2040296,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 144,
                "total_fragments": 497,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Peptoniphilus stercorisuis",
                "strain": "strain=DSM 27563",
                "accession": "GCA_017874395.1",
                "taxid": 1436965,
                "species_taxid": 1436965,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1328,
                "matched_fragments": 129,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerosphaera multitolerans",
                "strain": "strain=GS7-6-2",
                "accession": "GCA_004006535.1",
                "taxid": 2487351,
                "species_taxid": 2487351,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0176,
                "matched_fragments": 122,
                "total_fragments": 497,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Peptoniphilus obesi",
                "strain": "strain=ph1",
                "accession": "GCA_000311865.1",
                "taxid": 1472765,
                "species_taxid": 1472765,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6723,
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                "total_fragments": 497,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCF_000468535.1",
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                "matched_fragments": 495,
                "total_fragments": 497,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerosphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.03",
                "min_intra_species_ani": "99.03",
                "mean_intra_species_af": "0.96",
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            },
            {
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                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900129925.1",
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                "total_fragments": 497,
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCA_000952975.1",
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                "mean_intra_species_ani": "N/A",
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            {
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                "mean_intra_species_ani": "N/A",
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            },
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "mikwangii"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}