{ "type": "genome", "identifier": "GCF_000471625.1", "organism": "Psychrobacter aquaticus CMS 56", "title": "Psychrobacter aquaticus CMS 56", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Centre for Cellular and Molecular Biology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000471625.1", "bioproject": "PRJNA224116", "biosample": "SAMN02469418", "wgs_master": "AUSW00000000.1", "refseq_category": "reference genome", "taxid": "1354303", "species_taxid": "248452", "organism_name": "Psychrobacter aquaticus CMS 56", "infraspecific_name": "strain=CMS 56", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/09/24", "asm_name": "PsAq1.0", "asm_submitter": "Centre for Cellular and Molecular Biology", "gbrs_paired_asm": "GCA_000471625.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/471/625/GCF_000471625.1_PsAq1.0", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3216409", "genome_size_ungapped": "3216409", "gc_percent": "43.000000", "replicon_count": "0", "scaffold_count": "38", "contig_count": "38", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000471625.1-RS_2024_11_26", "annotation_date": "2024-11-26", "total_gene_count": "2754", "protein_coding_gene_count": "2667", "non_coding_gene_count": "49", "pubmed_id": "24201199" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-09-24", "dateModified": "2013-09-24", "datePublished": "2013-09-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Psychrobacter aquaticus CMS 56" ], "sample_taxid": [ "1354303" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica: McMurdo Dry Valley" ], "sample_host_location_id": [], "data_size": "0.917 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3216409", "Number of Sequences": "38", "Longest Sequences (bp)": "535134", "N50 (bp)": "195473", "Gap Ratio (%)": "0.000031", "GCcontent (%)": "43.1", "Number of CDSs": "2709", "Average Protein Length": "329.3", "Coding Ratio (%)": "83.2", "Number of rRNAs": "3", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Psychrobacter aquaticus", "strain": "strain=CMS 56", "accession": "GCA_000471625.1", "taxid": 248452, "species_taxid": 248452, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1055, "total_fragments": 1056, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Psychrobacter namhaensis", "strain": "strain=DSM 16330", "accession": "GCA_016107545.1", "taxid": 292734, "species_taxid": 292734, "relation_to_type": "type", "validated": true, "ani": 83.1318, "matched_fragments": 746, "total_fragments": 1056, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter aquimaris", "strain": "strain=DSM 16329", "accession": "GCA_016107525.1", "taxid": 292733, "species_taxid": 292733, "relation_to_type": "type", "validated": true, "ani": 82.3254, "matched_fragments": 744, "total_fragments": 1056, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter immobilis", "strain": "strain=DSM 7229", "accession": "GCA_003148585.1", "taxid": 498, "species_taxid": 498, "relation_to_type": "suspected-type", "validated": true, "ani": 81.9001, "matched_fragments": 718, "total_fragments": 1056, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter cibarius", "strain": "strain=DSM 16327", "accession": "GCA_016107535.1", "taxid": 282669, "species_taxid": 282669, "relation_to_type": "type", "validated": true, "ani": 81.8979, "matched_fragments": 708, "total_fragments": 1056, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter fozii", "strain": "strain=CECT 5889", "accession": "GCA_003217155.1", "taxid": 198480, "species_taxid": 198480, "relation_to_type": "type", "validated": true, "ani": 81.3212, "matched_fragments": 670, "total_fragments": 1056, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter pacificensis", "strain": "strain=DSM 23406", "accession": "GCA_900101915.1", "taxid": 112002, "species_taxid": 112002, "relation_to_type": "type", "validated": true, "ani": 81.1712, "matched_fragments": 628, "total_fragments": 1056, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter glaciei", "strain": "strain=KCTC 42280", "accession": "GCA_014652895.1", "taxid": 619771, "species_taxid": 619771, "relation_to_type": "type", "validated": true, "ani": 81.0465, "matched_fragments": 707, "total_fragments": 1056, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter luti", "strain": "strain=CECT 5885", "accession": "GCA_014192115.1", "taxid": 198481, "species_taxid": 198481, "relation_to_type": "type", "validated": true, "ani": 80.6253, "matched_fragments": 627, "total_fragments": 1056, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter arcticus", "strain": "strain=273-4", "accession": "GCA_000012305.1", "taxid": 334543, "species_taxid": 334543, "relation_to_type": "type", "validated": true, "ani": 80.5333, "matched_fragments": 561, "total_fragments": 1056, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter communis", "strain": "strain=Sa4CVA2", "accession": "GCA_014836505.1", "taxid": 2762238, "species_taxid": 2762238, "relation_to_type": "type", "validated": true, "ani": 80.342, "matched_fragments": 583, "total_fragments": 1056, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter halodurans", "strain": "strain=F2608", "accession": "GCA_017498075.1", "taxid": 2818439, "species_taxid": 2818439, "relation_to_type": "type", "validated": true, "ani": 80.0063, "matched_fragments": 564, "total_fragments": 1056, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter celer", "strain": "strain=DSM 23510", "accession": "GCA_016107555.1", "taxid": 306572, "species_taxid": 306572, "relation_to_type": "type", "validated": true, "ani": 79.9017, "matched_fragments": 583, "total_fragments": 1056, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacter 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Psychrobacter", "aquaticus", "CMS", "56" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }