{ "type": "genome", "identifier": "GCF_000472525.1", "organism": "Paraburkholderia dilworthii", "title": "Paraburkholderia dilworthii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000472525.1", "bioproject": "PRJNA224116", "biosample": "SAMN02440790", "wgs_master": "AWZT00000000.1", "refseq_category": "reference genome", "taxid": "948106", "species_taxid": "948106", "organism_name": "Paraburkholderia dilworthii", "infraspecific_name": "strain=WSM3556", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/09/30", "asm_name": "ASM47252v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000472525.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/472/525/GCF_000472525.1_ASM47252v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7679067", "genome_size_ungapped": "7678990", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "140", "contig_count": "141", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000472525.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "7068", "protein_coding_gene_count": "6707", "non_coding_gene_count": "55", "pubmed_id": "26388968" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-09-30", "dateModified": "2013-09-30", "datePublished": "2013-09-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Paraburkholderia dilworthii" ], "sample_taxid": [ "948106" ], "sample_host_organism": [ "Lebeckia ambigua" ], "sample_host_organism_id": [], "sample_host_disease": [ "None" ], 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"matched_fragments": 2475, "total_fragments": 2482, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paraburkholderia kirstenboschensis", "strain": "strain=LMG 28727", "accession": "GCA_904848585.1", "taxid": 1245436, "species_taxid": 1245436, "relation_to_type": "type", "validated": true, "ani": 90.1999, "matched_fragments": 1886, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia kirstenboschensis", "strain": "strain=KB15", "accession": "GCA_001636975.1", "taxid": 1245436, "species_taxid": 1245436, "relation_to_type": "type", "validated": true, "ani": 89.9213, "matched_fragments": 1519, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia caledonica", "strain": "strain=NBRC 102488", "accession": "GCA_000685095.1", "taxid": 134536, "species_taxid": 134536, "relation_to_type": "type", "validated": true, "ani": 89.2762, "matched_fragments": 1722, 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{ "organism_name": "Paraburkholderia haematera", "strain": "strain=LMG 31837", "accession": "GCA_905220975.1", "taxid": 2793077, "species_taxid": 2793077, "relation_to_type": "type", "validated": true, "ani": 84.6306, "matched_fragments": 1396, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia domus", "strain": "strain=LMG 31832", "accession": "GCA_905220705.1", "taxid": 2793075, "species_taxid": 2793075, "relation_to_type": "type", "validated": true, "ani": 84.5465, "matched_fragments": 1402, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia podalyriae", "strain": "strain=WC7.3b", "accession": "GCA_014397785.1", "taxid": 1938811, "species_taxid": 1938811, "relation_to_type": "type", "validated": true, "ani": 84.138, "matched_fragments": 1441, "total_fragments": 2482, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, 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