{ "type": "genome", "identifier": "GCF_000472825.1", "organism": "Paraburkholderia mimosarum LMG 23256 = NBRC 106338", "title": "Paraburkholderia mimosarum LMG 23256 = NBRC 106338", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000472825.1", "bioproject": "PRJNA224116", "biosample": "SAMN02440713", "wgs_master": "AXAN00000000.1", "refseq_category": "reference genome", "taxid": "1038869", "species_taxid": "312026", "organism_name": "Paraburkholderia mimosarum LMG 23256 = NBRC 106338", "infraspecific_name": "strain=LMG 23256", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/09/30", "asm_name": "ASM47282v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000472825.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/472/825/GCF_000472825.1_ASM47282v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8410967", "genome_size_ungapped": "8408747", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "268", "contig_count": "270", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000472825.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "7827", "protein_coding_gene_count": "7302", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-09-30", "dateModified": "2013-09-30", "datePublished": "2013-09-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Paraburkholderia mimosarum LMG 23256 = NBRC 106338" ], "sample_taxid": [ "1038869" ], "sample_host_organism": [ "Mimosa pigra" ], "sample_host_organism_id": [], "sample_host_disease": [ "None" ], "sample_host_disease_id": [], "sample_host_location": [ "Taiwan" ], "sample_host_location_id": [], "data_size": "2.347 MB", "sample_ph_range": { "min": 58.0, "max": 58.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8410967", "Number of Sequences": "268", "Longest Sequences (bp)": "518971", "N50 (bp)": "124968", "Gap Ratio (%)": "0.031388", "GCcontent (%)": "63.9", "Number of CDSs": "7468", "Average Protein Length": "307.0", "Coding Ratio (%)": "81.8", "Number of rRNAs": "0", "Number of tRNAs": "65", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paraburkholderia mimosarum", "strain": "strain=LMG 23256", "accession": 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392320, "relation_to_type": "type", "validated": true, "ani": 88.742, "matched_fragments": 1811, "total_fragments": 2670, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia acidiphila", "strain": "strain=7Q-K02", "accession": "GCA_009789655.1", "taxid": 2571747, "species_taxid": 2571747, "relation_to_type": "type", "validated": true, "ani": 88.5164, "matched_fragments": 1636, "total_fragments": 2670, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia heleia", "strain": "strain=NBRC 101817", "accession": "GCA_000739775.1", "taxid": 634127, "species_taxid": 634127, "relation_to_type": "type", "validated": true, "ani": 88.3054, "matched_fragments": 1698, "total_fragments": 2670, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia lycopersici", "strain": "strain=TNe-862", "accession": "GCA_900096975.1", "taxid": 416944, "species_taxid": 416944, "relation_to_type": "type", 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"matched_fragments": 1466, "total_fragments": 2670, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia sacchari", "strain": "strain=LMG 19450", "accession": "GCA_000785435.2", "taxid": 159450, "species_taxid": 159450, "relation_to_type": "type", "validated": true, "ani": 84.8997, "matched_fragments": 1469, "total_fragments": 2670, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia azotifigens", "strain": "strain=NF 2-5-3", "accession": "GCA_007995085.1", "taxid": 2057004, "species_taxid": 2057004, "relation_to_type": "type", "validated": true, "ani": 81.1146, "matched_fragments": 1221, "total_fragments": 2670, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia gardini", "strain": "strain=LMG 32171", "accession": "GCA_907164575.1", "taxid": 2823469, "species_taxid": 2823469, "relation_to_type": "type", "validated": true, "ani": 81.0095, "matched_fragments": 963, 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