{
    "type": "genome",
    "identifier": "GCF_000473105.1",
    "organism": "Phaeobacter inhibens DSM 16374",
    "title": "Phaeobacter inhibens DSM 16374",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000473105.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02440777",
        "wgs_master": "AXBB00000000.1",
        "refseq_category": "na",
        "taxid": "999548",
        "species_taxid": "221822",
        "organism_name": "Phaeobacter inhibens DSM 16374",
        "infraspecific_name": "strain=DSM 16374",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/09/30",
        "asm_name": "ASM47310v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000473105.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/473/105/GCF_000473105.1_ASM47310v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4130897",
        "genome_size_ungapped": "4130697",
        "gc_percent": "60.000000",
        "replicon_count": "0",
        "scaffold_count": "6",
        "contig_count": "8",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000473105.1-RS_2024_07_24",
        "annotation_date": "2024-07-24",
        "total_gene_count": "3924",
        "protein_coding_gene_count": "3840",
        "non_coding_gene_count": "56",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-09-30",
    "dateModified": "2013-09-30",
    "datePublished": "2013-09-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Phaeobacter inhibens DSM 16374"
        ],
        "sample_taxid": [
            "999548"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany"
        ],
        "sample_host_location_id": [],
        "data_size": "1.162 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4130897",
        "Number of Sequences": "6",
        "Longest Sequences (bp)": "3361358",
        "N50 (bp)": "3361358",
        "Gap Ratio (%)": "0.005011",
        "GCcontent (%)": "60.0",
        "Number of CDSs": "3959",
        "Average Protein Length": "309.3",
        "Coding Ratio (%)": "88.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Phaeobacter inhibens",
                "strain": "strain=DSM 16374",
                "accession": "GCA_000473105.1",
                "taxid": 221822,
                "species_taxid": 221822,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1372,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Phaeobacter piscinae",
                "strain": "strain=P14",
                "accession": "GCA_002407245.1",
                "taxid": 1580596,
                "species_taxid": 1580596,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.8647,
                "matched_fragments": 1203,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phaeobacter gallaeciensis",
                "strain": "strain=DSM 26640",
                "accession": "GCA_000819625.1",
                "taxid": 60890,
                "species_taxid": 60890,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.2614,
                "matched_fragments": 1247,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phaeobacter gallaeciensis",
                "strain": "strain=DSM 26640",
                "accession": "GCA_000511385.1",
                "taxid": 60890,
                "species_taxid": 60890,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.2209,
                "matched_fragments": 1258,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phaeobacter porticola",
                "strain": "strain=P97",
                "accession": "GCA_001888185.1",
                "taxid": 1844006,
                "species_taxid": 1844006,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.8021,
                "matched_fragments": 1076,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phaeobacter italicus",
                "strain": "strain=DSM 26436",
                "accession": "GCA_900113345.1",
                "taxid": 481446,
                "species_taxid": 481446,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8917,
                "matched_fragments": 829,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudophaeobacter flagellatus",
                "strain": "strain=MA21411-1",
                "accession": "GCA_021228235.1",
                "taxid": 2899119,
                "species_taxid": 2899119,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6037,
                "matched_fragments": 565,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Zongyanglinia marina",
                "strain": "strain=DSW4-44",
                "accession": "GCA_005771405.1",
                "taxid": 2578117,
                "species_taxid": 2578117,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7393,
                "matched_fragments": 343,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Zongyanglinia huanghaiensis",
                "strain": "strain=CY05",
                "accession": "GCA_009753675.1",
                "taxid": 2682100,
                "species_taxid": 2682100,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5259,
                "matched_fragments": 381,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salipiger marinus",
                "strain": "strain=DSM 26424",
                "accession": "GCA_900100085.1",
                "taxid": 555512,
                "species_taxid": 555512,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3766,
                "matched_fragments": 332,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Celeribacter litoreus",
                "strain": "strain=ASW11-22",
                "accession": "GCA_020165855.1",
                "taxid": 2876714,
                "species_taxid": 2876714,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3655,
                "matched_fragments": 160,
                "total_fragments": 1374,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000473105.1",
                "gtdb_species": "s__Phaeobacter inhibens",
                "ani": 100.0,
                "matched_fragments": 1373,
                "total_fragments": 1374,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Phaeobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.82",
                "min_intra_species_ani": "97.14",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 26,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002407245.1",
                "gtdb_species": "s__Phaeobacter piscinae",
                "ani": 90.8647,
                "matched_fragments": 1203,
                "total_fragments": 1374,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Phaeobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.42",
                "min_intra_species_ani": "96.04",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCF_000511385.1",
                "gtdb_species": "s__Phaeobacter gallaeciensis",
                "ani": 90.2085,
                "matched_fragments": 1259,
                "total_fragments": 1374,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Phaeobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.42",
                "min_intra_species_ani": "98.01",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_001888185.1",
                "gtdb_species": "s__Phaeobacter porticola",
                "ani": 87.8141,
                "matched_fragments": 1076,
                "total_fragments": 1374,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Phaeobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001258055.1",
                "gtdb_species": "s__Phaeobacter italicus",
                "ani": 81.9534,
                "matched_fragments": 819,
                "total_fragments": 1374,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Phaeobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.00",
                "min_intra_species_ani": "98.06",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_000473145.1",
                "gtdb_species": "s__Leisingera daeponensis",
                "ani": 79.9845,
                "matched_fragments": 706,
                "total_fragments": 1374,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Leisingera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.26",
                "min_intra_species_ani": "98.26",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000203975.2",
                "gtdb_species": "s__Leisingera sp000203975",
                "ani": 79.9379,
                "matched_fragments": 652,
                "total_fragments": 1374,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Leisingera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.92",
                "min_intra_species_ani": "98.17",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_013317235.1",
                "gtdb_species": "s__Leisingera sp013317235",
                "ani": 79.8372,
                "matched_fragments": 685,
                "total_fragments": 1374,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Leisingera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015665415.1",
                "gtdb_species": "s__Pseudophaeobacter sp015665415",
                "ani": 78.9964,
                "matched_fragments": 559,
                "total_fragments": 1374,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pseudophaeobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.222,
        "cell_length": 0.146,
        "doubling_h": null,
        "growth_tmp": 24.0,
        "optimum_tmp": 28.0,
        "optimum_ph": 7.5,
        "genome_size": 4332486.667,
        "gc_content": 59.977,
        "coding_genes": 4015.273,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 57.25,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Phaeobacter",
        "inhibens",
        "DSM",
        "16374"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}