{ "type": "genome", "identifier": "GCF_000474055.1", "organism": "Streptococcus anginosus SK52 = DSM 20563", "title": "Streptococcus anginosus SK52 = DSM 20563", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Pediatric Dentistry, Tokyo Dental College", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000474055.1", "bioproject": "PRJNA224116", "biosample": "SAMD00036758", "wgs_master": "BAST00000000.1", "refseq_category": "na", "taxid": "1000570", "species_taxid": "1328", "organism_name": "Streptococcus anginosus SK52 = DSM 20563", "infraspecific_name": "strain=SK52", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/09/09", "asm_name": "ASM47405v1", "asm_submitter": "Pediatric Dentistry, Tokyo Dental College", "gbrs_paired_asm": "GCA_000474055.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/474/055/GCF_000474055.1_ASM47405v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1900641", "genome_size_ungapped": "1900641", "gc_percent": "38.500000", "replicon_count": "0", "scaffold_count": "24", "contig_count": "24", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000474055.1-RS_2024_09_09", "annotation_date": "2024-09-09", "total_gene_count": "1881", "protein_coding_gene_count": "1736", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-09-09", "dateModified": "2013-09-09", "datePublished": "2013-09-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus anginosus SK52 = DSM 20563" ], "sample_taxid": [ "1000570" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.538 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1900541", "Number of Sequences": "23", "Longest Sequences (bp)": "307285", "N50 (bp)": "244500", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.6", "Number of CDSs": "1840", "Average Protein Length": "302.6", "Coding Ratio (%)": "87.9", "Number of rRNAs": "2", "Number of tRNAs": "46", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus anginosus", "strain": "strain=SK52", "accession": "GCA_000474055.1", "taxid": 1328, "species_taxid": 1328, "relation_to_type": "type", 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623, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus anginosus subsp. anginosus", "strain": "strain=FDAARGOS_1569", "accession": "GCA_020735765.1", "taxid": 1671923, "species_taxid": 1328, "relation_to_type": "type", "validated": true, "ani": 99.9558, "matched_fragments": 611, "total_fragments": 623, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus anginosus", "strain": "strain=SK52", "accession": "GCA_000214555.2", "taxid": 1328, "species_taxid": 1328, "relation_to_type": "type", "validated": true, "ani": 99.8897, "matched_fragments": 571, "total_fragments": 623, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus constellatus subsp. constellatus", "strain": "strain=CCUG 24889", "accession": "GCA_023167545.1", "taxid": 184246, "species_taxid": 76860, "relation_to_type": "type", "validated": true, "ani": 89.8938, "matched_fragments": 508, "total_fragments": 623, "ani_threshold": 95, "status": 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