{
    "type": "genome",
    "identifier": "GCF_000474235.1",
    "organism": "Halarchaeum acidiphilum MH1-52-1",
    "title": "Halarchaeum acidiphilum MH1-52-1",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Japan Agency for Marine-Earth Science and Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000474235.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00036764",
        "wgs_master": "BATA00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1261545",
        "species_taxid": "489138",
        "organism_name": "Halarchaeum acidiphilum MH1-52-1",
        "infraspecific_name": "strain=JCM 16109",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/09/13",
        "asm_name": "ASM47423v1",
        "asm_submitter": "Japan Agency for Marine-Earth Science and Technology",
        "gbrs_paired_asm": "GCA_000474235.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/474/235/GCF_000474235.1_ASM47423v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "2628974",
        "genome_size_ungapped": "2628974",
        "gc_percent": "67.500000",
        "replicon_count": "0",
        "scaffold_count": "165",
        "contig_count": "165",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000474235.1-RS_2024_10_21",
        "annotation_date": "2024-10-21",
        "total_gene_count": "2857",
        "protein_coding_gene_count": "2528",
        "non_coding_gene_count": "52",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-09-13",
    "dateModified": "2013-09-13",
    "datePublished": "2013-09-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Halarchaeum acidiphilum MH1-52-1"
        ],
        "sample_taxid": [
            "1261545"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.711 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 89.58,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2628974",
        "Number of Sequences": "165",
        "Longest Sequences (bp)": "98563",
        "N50 (bp)": "29538",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "67.4",
        "Number of CDSs": "2718",
        "Average Protein Length": "266.4",
        "Coding Ratio (%)": "82.6",
        "Number of rRNAs": "4",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "7"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Halarchaeum acidiphilum",
                "strain": "strain=JCM 16109",
                "accession": "GCA_000474235.1",
                "taxid": 489138,
                "species_taxid": 489138,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 792,
                "total_fragments": 801,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Halarchaeum acidiphilum",
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                "accession": "GCA_000400975.1",
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                "species_taxid": 489138,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.2863,
                "matched_fragments": 536,
                "total_fragments": 801,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Halarchaeum rubridurum",
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                "accession": "GCA_014647115.1",
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                "species_taxid": 489911,
                "relation_to_type": "type",
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                "total_fragments": 801,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halarchaeum rubridurum",
                "strain": "strain=DSM 22443",
                "accession": "GCA_017873775.1",
                "taxid": 489911,
                "species_taxid": 489911,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.3922,
                "matched_fragments": 596,
                "total_fragments": 801,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halarchaeum grantii",
                "strain": "strain=JCM 19585",
                "accession": "GCA_014647455.2",
                "taxid": 1193105,
                "species_taxid": 1193105,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.9123,
                "matched_fragments": 584,
                "total_fragments": 801,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 89.58,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000474235.1",
                "gtdb_species": "s__Halarchaeum acidiphilum",
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                "matched_fragments": 792,
                "total_fragments": 801,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Halobacteriaceae;g__Halarchaeum",
                "ani_circumscription_radius": 95.0,
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                "min_intra_species_ani": "99.69",
                "mean_intra_species_af": "0.96",
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                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_014647115.1",
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                "total_fragments": 801,
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                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_017874335.1",
                "gtdb_species": "s__Halarchaeum salinum",
                "ani": 86.8794,
                "matched_fragments": 599,
                "total_fragments": 801,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Halobacteriaceae;g__Halarchaeum",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014647155.1",
                "gtdb_species": "s__Halarchaeum nitratireducens",
                "ani": 86.6089,
                "matched_fragments": 589,
                "total_fragments": 801,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Halobacteriaceae;g__Halarchaeum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.88",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014647455.2",
                "gtdb_species": "s__Halarchaeum grantii",
                "ani": 84.9126,
                "matched_fragments": 584,
                "total_fragments": 801,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Halobacteriaceae;g__Halarchaeum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.76",
                "min_intra_species_ani": "95.76",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.301,
        "cell_length": 0.085,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
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        "genome_size": 2617647.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 1.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Halarchaeum",
        "acidiphilum",
        "MH1-52-1"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}