{
    "type": "genome",
    "identifier": "GCF_000479045.1",
    "organism": "Cetobacterium somerae ATCC BAA-474",
    "title": "Cetobacterium somerae ATCC BAA-474",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Washington University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000479045.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02436737",
        "wgs_master": "AXZF00000000.1",
        "refseq_category": "na",
        "taxid": "1319815",
        "species_taxid": "188913",
        "organism_name": "Cetobacterium somerae ATCC BAA-474",
        "infraspecific_name": "strain=ATCC BAA-474",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/10/23",
        "asm_name": "ASM47904v1",
        "asm_submitter": "Washington University",
        "gbrs_paired_asm": "GCA_000479045.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/479/045/GCF_000479045.1_ASM47904v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3068248",
        "genome_size_ungapped": "3064648",
        "gc_percent": "28.500000",
        "replicon_count": "0",
        "scaffold_count": "174",
        "contig_count": "210",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000479045.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "2964",
        "protein_coding_gene_count": "2887",
        "non_coding_gene_count": "37",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-10-23",
    "dateModified": "2013-10-23",
    "datePublished": "2013-10-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Cetobacterium somerae ATCC BAA-474"
        ],
        "sample_taxid": [
            "1319815"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.834 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3068248",
        "Number of Sequences": "174",
        "Longest Sequences (bp)": "153130",
        "N50 (bp)": "47157",
        "Gap Ratio (%)": "0.117331",
        "GCcontent (%)": "28.6",
        "Number of CDSs": "2812",
        "Average Protein Length": "324.2",
        "Coding Ratio (%)": "89.1",
        "Number of rRNAs": "2",
        "Number of tRNAs": "30",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Cetobacterium somerae",
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                "species_taxid": 188913,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 926,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Cetobacterium ceti",
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                "accession": "GCA_900167275.1",
                "taxid": 180163,
                "species_taxid": 180163,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 275,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium ulcerans",
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                "accession": "GCA_003019675.1",
                "taxid": 861,
                "species_taxid": 861,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium necrogenes",
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                "accession": "GCA_900450765.1",
                "taxid": 858,
                "species_taxid": 858,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4801,
                "matched_fragments": 163,
                "total_fragments": 932,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium perfoetens",
                "strain": "strain=ATCC 29250",
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                "taxid": 852,
                "species_taxid": 852,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4265,
                "matched_fragments": 177,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium varium",
                "strain": "strain=NCTC10560",
                "accession": "GCA_900637705.1",
                "taxid": 856,
                "species_taxid": 856,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3544,
                "matched_fragments": 208,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Psychrilyobacter atlanticus",
                "strain": "strain=DSM 19335",
                "accession": "GCA_000426625.1",
                "taxid": 271091,
                "species_taxid": 271091,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7185,
                "matched_fragments": 95,
                "total_fragments": 932,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium hwasookii",
                "strain": "strain=KCOM 1249",
                "accession": "GCA_014217355.1",
                "taxid": 1583098,
                "species_taxid": 1583098,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6707,
                "matched_fragments": 123,
                "total_fragments": 932,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium hwasookii",
                "strain": "strain=ChDC F128",
                "accession": "GCA_000292935.1",
                "taxid": 1583098,
                "species_taxid": 1583098,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.646,
                "matched_fragments": 121,
                "total_fragments": 932,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium saccharoperbutylacetonicum",
                "strain": "strain=N1-4(HMT)",
                "accession": "GCA_000340885.1",
                "taxid": 36745,
                "species_taxid": 36745,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8715,
                "matched_fragments": 74,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Terrisporobacter glycolicus",
                "strain": "strain=DSM 1288",
                "accession": "GCA_000439105.1",
                "taxid": 36841,
                "species_taxid": 36841,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 74.8413,
                "matched_fragments": 83,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium massiliamazoniense",
                "strain": "strain=ND2",
                "accession": "GCA_001403635.1",
                "taxid": 1347366,
                "species_taxid": 1347366,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.6893,
                "matched_fragments": 61,
                "total_fragments": 932,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_000479045.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Cetobacterium_A",
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            },
            {
                "accession": "GCF_014250675.1",
                "gtdb_species": "s__Cetobacterium_A sp014250675",
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            {
                "accession": "GCA_900766645.1",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "ATCC",
        "BAA-474"
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}