{
    "type": "genome",
    "identifier": "GCF_000479335.1",
    "organism": "Streptococcus ilei",
    "title": "Streptococcus ilei",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Kyung Hee University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000479335.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02299294",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1156431",
        "species_taxid": "1156431",
        "organism_name": "Streptococcus ilei",
        "infraspecific_name": "strain=I-G2",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/10/24",
        "asm_name": "ASM47933v1",
        "asm_submitter": "Kyung Hee University",
        "gbrs_paired_asm": "GCA_000479335.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/479/335/GCF_000479335.1_ASM47933v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1992567",
        "genome_size_ungapped": "1992567",
        "gc_percent": "42.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000479335.1-RS_2024_09_03",
        "annotation_date": "2024-09-03",
        "total_gene_count": "1922",
        "protein_coding_gene_count": "1805",
        "non_coding_gene_count": "71",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-10-24",
    "dateModified": "2013-10-24",
    "datePublished": "2013-10-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptococcus ilei"
        ],
        "sample_taxid": [
            "1156431"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.562 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1992567",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "1992567",
        "N50 (bp)": "1992567",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "42.1",
        "Number of CDSs": "1860",
        "Average Protein Length": "312.7",
        "Coding Ratio (%)": "87.6",
        "Number of rRNAs": "8",
        "Number of tRNAs": "59",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Streptococcus ilei",
                "strain": "strain=I-G2",
                "accession": "GCA_000479335.1",
                "taxid": 1156431,
                "species_taxid": 1156431,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 663,
                "total_fragments": 664,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Streptococcus koreensis",
                "strain": "strain=JS71",
                "accession": "GCA_003627135.1",
                "taxid": 2382163,
                "species_taxid": 2382163,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.5563,
                "matched_fragments": 599,
                "total_fragments": 664,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Streptococcus australis",
                "strain": "strain=NCTC13166",
                "accession": "GCA_900476055.1",
                "taxid": 113107,
                "species_taxid": 113107,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.7479,
                "matched_fragments": 571,
                "total_fragments": 664,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus australis",
                "strain": "strain=ATCC 700641",
                "accession": "GCA_000222745.2",
                "taxid": 113107,
                "species_taxid": 113107,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.6859,
                "matched_fragments": 567,
                "total_fragments": 664,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus australis",
                "strain": "strain=ATCC 700641",
                "accession": "GCA_000186465.1",
                "taxid": 113107,
                "species_taxid": 113107,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.6425,
                "matched_fragments": 573,
                "total_fragments": 664,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus xiaochunlingii",
                "strain": "strain=E24",
                "accession": "GCA_006385805.1",
                "taxid": 2589788,
                "species_taxid": 2589788,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.1172,
                "matched_fragments": 554,
                "total_fragments": 664,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus rubneri",
                "strain": "strain=DSM 26920",
                "accession": "GCA_004785935.1",
                "taxid": 1234680,
                "species_taxid": 1234680,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.3571,
                "matched_fragments": 565,
                "total_fragments": 664,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus parasanguinis",
                "strain": "strain=NCTC12854",
                "accession": "GCA_900459355.1",
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                "species_taxid": 1318,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 84.8603,
                "matched_fragments": 403,
                "total_fragments": 664,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus parasanguinis",
                "strain": "strain=ATCC 15912",
                "accession": "GCA_000164675.2",
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                "species_taxid": 1318,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 84.7759,
                "matched_fragments": 401,
                "total_fragments": 664,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_003627135.1",
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                "matched_fragments": 599,
                "total_fragments": 664,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.43",
                "min_intra_species_ani": "95.11",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 8,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_015553625.1",
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                "total_fragments": 664,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.97",
                "min_intra_species_ani": "95.85",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "inconclusive"
            },
            {
                "accession": "GCA_902836505.1",
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                "total_fragments": 664,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004166885.1",
                "gtdb_species": "s__Streptococcus sp004166885",
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                "total_fragments": 664,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
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                "mean_intra_species_ani": "96.19",
                "min_intra_species_ani": "95.32",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_000186465.1",
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                "matched_fragments": 572,
                "total_fragments": 664,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
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                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_006385805.1",
                "gtdb_species": "s__Streptococcus xiaochunlingii",
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                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_004785935.1",
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            },
            {
                "accession": "GCF_000314795.2",
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                "accession": "GCA_902373455.1",
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                "accession": "GCF_016642265.1",
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            },
            {
                "accession": "GCA_900755085.1",
                "gtdb_species": "s__Streptococcus sp900755085",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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    "_genome_taxon": [
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}