{
    "type": "genome",
    "identifier": "GCF_000482505.1",
    "organism": "Leptotrichia trevisanii DSM 22070",
    "title": "Leptotrichia trevisanii DSM 22070",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000482505.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02441112",
        "wgs_master": "AXVL00000000.1",
        "refseq_category": "na",
        "taxid": "1122173",
        "species_taxid": "109328",
        "organism_name": "Leptotrichia trevisanii DSM 22070",
        "infraspecific_name": "strain=DSM 22070",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/10/25",
        "asm_name": "ASM48250v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000482505.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/482/505/GCF_000482505.1_ASM48250v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2853356",
        "genome_size_ungapped": "2840910",
        "gc_percent": "30.500000",
        "replicon_count": "0",
        "scaffold_count": "78",
        "contig_count": "91",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000482505.1-RS_2024_05_15",
        "annotation_date": "2024-05-15",
        "total_gene_count": "2731",
        "protein_coding_gene_count": "2636",
        "non_coding_gene_count": "46",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-10-25",
    "dateModified": "2013-10-25",
    "datePublished": "2013-10-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Leptotrichia trevisanii DSM 22070"
        ],
        "sample_taxid": [
            "1122173"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Australia"
        ],
        "sample_host_location_id": [],
        "data_size": "0.778 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2853356",
        "Number of Sequences": "78",
        "Longest Sequences (bp)": "320308",
        "N50 (bp)": "94497",
        "Gap Ratio (%)": "0.436188",
        "GCcontent (%)": "30.3",
        "Number of CDSs": "2636",
        "Average Protein Length": "296.5",
        "Coding Ratio (%)": "82.2",
        "Number of rRNAs": "1",
        "Number of tRNAs": "38",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Leptotrichia trevisanii",
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                "accession": "GCA_000482505.1",
                "taxid": 109328,
                "species_taxid": 109328,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 910,
                "total_fragments": 913,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Leptotrichia massiliensis",
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                "accession": "GCA_900104625.1",
                "taxid": 1852388,
                "species_taxid": 1852388,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 913,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptotrichia hofstadii",
                "strain": "strain=JCM16775",
                "accession": "GCA_007990525.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptotrichia hofstadii",
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                "accession": "GCA_000428965.1",
                "taxid": 157688,
                "species_taxid": 157688,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.9994,
                "matched_fragments": 657,
                "total_fragments": 913,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptotrichia buccalis",
                "strain": "strain=DSM 1135",
                "accession": "GCA_000023905.1",
                "taxid": 40542,
                "species_taxid": 40542,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.5541,
                "matched_fragments": 605,
                "total_fragments": 913,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptotrichia shahii",
                "strain": "strain=DSM 19757",
                "accession": "GCA_000373045.1",
                "taxid": 157691,
                "species_taxid": 157691,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.1316,
                "matched_fragments": 542,
                "total_fragments": 913,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptotrichia wadei",
                "strain": "strain=DSM 19758",
                "accession": "GCA_000373345.1",
                "taxid": 157687,
                "species_taxid": 157687,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.9887,
                "matched_fragments": 553,
                "total_fragments": 913,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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            {
                "accession": "GCF_000482505.1",
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                "matched_fragments": 909,
                "total_fragments": 913,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.98",
                "min_intra_species_ani": "97.58",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 4,
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            },
            {
                "accession": "GCF_013394795.1",
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                "matched_fragments": 688,
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                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_900104625.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.80",
                "min_intra_species_ani": "96.21",
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                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.32",
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            },
            {
                "accession": "GCF_007990635.1",
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
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            },
            {
                "accession": "GCF_000469385.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.097,
        "cell_length": 0.778,
        "doubling_h": null,
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        "rRNA16S_genes": 5.0,
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        "sporulation": 0.0,
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        "range_salinity": null,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 1.0,
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        "filament_cell_shape": 0.0,
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    },
    "_genome_taxon": [
        "Leptotrichia",
        "trevisanii",
        "DSM",
        "22070"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}