{ "type": "genome", "identifier": "GCF_000482745.1", "organism": "Oleidesulfovibrio alaskensis DSM 16109", "title": "Oleidesulfovibrio alaskensis DSM 16109", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000482745.1", "bioproject": "PRJNA224116", "biosample": "SAMN02441442", "wgs_master": "AXWQ00000000.1", "refseq_category": "na", "taxid": "1121436", "species_taxid": "58180", "organism_name": "Oleidesulfovibrio alaskensis DSM 16109", "infraspecific_name": "strain=DSM 16109", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/10/25", "asm_name": "ASM48274v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000482745.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/482/745/GCF_000482745.1_ASM48274v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3553960", "genome_size_ungapped": "3550684", "gc_percent": "58.000000", "replicon_count": "0", "scaffold_count": "26", "contig_count": "31", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000482745.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3222", "protein_coding_gene_count": "3132", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-10-25", "dateModified": "2013-10-25", "datePublished": "2013-10-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Oleidesulfovibrio alaskensis DSM 16109" ], "sample_taxid": [ "1121436" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.998 MB", "sample_ph_range": { "min": 6585.0, "max": 6585.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3553960", "Number of Sequences": "26", "Longest Sequences (bp)": "696259", "N50 (bp)": "343091", "Gap Ratio (%)": "0.092179", "GCcontent (%)": "58.0", "Number of CDSs": "3200", "Average Protein Length": "325.2", "Coding Ratio (%)": "87.8", "Number of rRNAs": "1", "Number of tRNAs": "61", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Oleidesulfovibrio alaskensis", "strain": "strain=DSM 16109", "accession": "GCA_000482745.1", "taxid": 58180, "species_taxid": 58180, 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77.2724, "matched_fragments": 190, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupidesulfovibrio oxamicus", "strain": "strain=NCIMB 9442", "accession": "GCA_015731765.1", "taxid": 32016, "species_taxid": 32016, "relation_to_type": "type", "validated": true, "ani": 77.1801, "matched_fragments": 178, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio vulgaris", "strain": "strain=Hildenborough", "accession": "GCA_902167245.1", "taxid": 881, "species_taxid": 881, "relation_to_type": "type", "validated": true, "ani": 77.1577, "matched_fragments": 157, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio vulgaris", "strain": "strain=Hildenborough", "accession": "GCA_000195755.1", "taxid": 881, "species_taxid": 881, "relation_to_type": "type", "validated": true, "ani": 77.1523, "matched_fragments": 161, "total_fragments": 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"below_threshold" }, { "organism_name": "Pseudodesulfovibrio sediminis", "strain": "strain=SF6", "accession": "GCA_020886695.1", "taxid": 2810563, "species_taxid": 2810563, "relation_to_type": "type", "validated": true, "ani": 76.4398, "matched_fragments": 51, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bilophila wadsworthia", "strain": "strain=ATCC 49260", "accession": "GCA_000701705.1", "taxid": 35833, "species_taxid": 35833, "relation_to_type": "type", "validated": true, "ani": 76.3937, "matched_fragments": 71, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solidesulfovibrio carbinolicus", "strain": "strain=DSM 3852", "accession": "GCA_004135975.1", "taxid": 296842, "species_taxid": 296842, "relation_to_type": "type", "validated": true, "ani": 76.121, "matched_fragments": 76, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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