{ "type": "genome", "identifier": "GCF_000482845.1", "organism": "Anaerobiospirillum succiniciproducens DSM 6400", "title": "Anaerobiospirillum succiniciproducens DSM 6400", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000482845.1", "bioproject": "PRJNA224116", "biosample": "SAMN02440755", "wgs_master": "AXWV00000000.1", "refseq_category": "reference genome", "taxid": "1120988", "species_taxid": "13335", "organism_name": "Anaerobiospirillum succiniciproducens DSM 6400", "infraspecific_name": "strain=DSM 6400", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/10/25", "asm_name": "ASM48284v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000482845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/482/845/GCF_000482845.1_ASM48284v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3804739", "genome_size_ungapped": "3796093", "gc_percent": "43.500000", "replicon_count": "0", "scaffold_count": "155", "contig_count": "163", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000482845.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "2287", "protein_coding_gene_count": "2172", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-10-25", "dateModified": "2013-10-25", "datePublished": "2013-10-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Anaerobiospirillum succiniciproducens DSM 6400" ], "sample_taxid": [ "1120988" ], "sample_host_organism": [ "Canis lupus familiaris" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "1.081 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.08, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3804739", "Number of Sequences": "155", "Longest Sequences (bp)": "136277", "N50 (bp)": "45773", "Gap Ratio (%)": "0.227243", "GCcontent (%)": "43.6", "Number of CDSs": "2187", "Average Protein Length": "399.8", "Coding Ratio (%)": "68.9", "Number of rRNAs": "3", "Number of tRNAs": "55", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Anaerobiospirillum succiniciproducens", "strain": "strain=DSM 6400", "accession": "GCA_000482845.1", "taxid": 13335, "species_taxid": 13335, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1180, "total_fragments": 1191, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Anaerobiospirillum thomasii", "strain": "strain=NCTC12467", "accession": "GCA_900445255.1", "taxid": 179995, "species_taxid": 179995, "relation_to_type": "type", "validated": true, "ani": 77.6183, "matched_fragments": 82, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Succinivibrio dextrinosolvens", "strain": "strain=DSM 3072", "accession": "GCA_900167015.1", "taxid": 83771, "species_taxid": 83771, "relation_to_type": "type", "validated": true, "ani": 77.3728, "matched_fragments": 71, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 2.08, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000482845.1", "gtdb_species": "s__Anaerobiospirillum succiniciproducens", "ani": 100.0, "matched_fragments": 1180, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Anaerobiospirillum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_900543125.1", "gtdb_species": "s__Anaerobiospirillum sp900543125", "ani": 79.0147, "matched_fragments": 247, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Anaerobiospirillum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.86", "min_intra_species_ani": "99.86", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_019113025.1", "gtdb_species": "s__Anaerobiospirillum stercoravium", "ani": 78.0549, "matched_fragments": 117, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Anaerobiospirillum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019114785.1", "gtdb_species": "s__Anaerobiospirillum pullistercoris", "ani": 78.046, "matched_fragments": 180, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Anaerobiospirillum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018884035.1", "gtdb_species": "s__Anaerobiospirillum pullicola", "ani": 77.7463, "matched_fragments": 123, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Anaerobiospirillum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900552905.1", "gtdb_species": "s__Succinivibrio sp900552905", "ani": 77.69, "matched_fragments": 50, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Succinivibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.96", "min_intra_species_ani": "98.95", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_905186145.1", "gtdb_species": "s__Succinivibrio sp905186145", "ani": 77.2821, "matched_fragments": 72, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Succinivibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900315395.1", "gtdb_species": "s__Succinivibrio sp900315395", "ani": 77.0678, "matched_fragments": 72, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Succinivibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.82", "min_intra_species_ani": "99.64", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_002449335.1", "gtdb_species": "s__Succinivibrio sp002449335", "ani": 76.3697, "matched_fragments": 75, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Succinivibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.89", "min_intra_species_ani": "95.86", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.86", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.222, "cell_length": 0.477, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": null, "optimum_ph": null, "genome_size": 3801392.5, "gc_content": 43.6, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": null, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 1.0 }, "_genome_taxon": [ "Anaerobiospirillum", "succiniciproducens", "DSM", "6400" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }