{
    "type": "genome",
    "identifier": "GCF_000484505.2",
    "organism": "Clostridium autoethanogenum DSM 10061",
    "title": "Clostridium autoethanogenum DSM 10061",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Oak Ridge National Lab",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000484505.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02358571",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "1341692",
        "species_taxid": "84023",
        "organism_name": "Clostridium autoethanogenum DSM 10061",
        "infraspecific_name": "strain=DSM 10061",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/06/02",
        "asm_name": "ASM48450v2",
        "asm_submitter": "Oak Ridge National Lab",
        "gbrs_paired_asm": "GCA_000484505.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/484/505/GCF_000484505.2_ASM48450v2",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4357704",
        "genome_size_ungapped": "4357704",
        "gc_percent": "31.000000",
        "replicon_count": "2",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000484505.2-RS_2024_06_14",
        "annotation_date": "2024-06-14",
        "total_gene_count": "4132",
        "protein_coding_gene_count": "3929",
        "non_coding_gene_count": "101",
        "pubmed_id": "24655715"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-06-02",
    "dateModified": "2022-06-02",
    "datePublished": "2022-06-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Clostridium autoethanogenum DSM 10061"
        ],
        "sample_taxid": [
            "1341692"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Belgium"
        ],
        "sample_host_location_id": [],
        "data_size": "1.190 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 98.96,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4357704",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "4352205",
        "N50 (bp)": "4352205",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "31.1",
        "Number of CDSs": "4110",
        "Average Protein Length": "298.9",
        "Coding Ratio (%)": "84.6",
        "Number of rRNAs": "21",
        "Number of tRNAs": "68",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Clostridium autoethanogenum",
                "strain": "strain=DSM 10061",
                "accession": "GCA_000484505.2",
                "taxid": 84023,
                "species_taxid": 84023,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1451,
                "total_fragments": 1451,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Clostridium autoethanogenum",
                "strain": "strain=DSM 10061",
                "accession": "GCA_001484725.1",
                "taxid": 84023,
                "species_taxid": 84023,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9953,
                "matched_fragments": 1449,
                "total_fragments": 1451,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Clostridium autoethanogenum",
                "strain": "strain=JA1-1",
                "accession": "GCA_002189005.1",
                "taxid": 84023,
                "species_taxid": 84023,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9746,
                "matched_fragments": 1427,
                "total_fragments": 1451,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Clostridium autoethanogenum",
                "strain": "strain=DSM 10061",
                "accession": "GCA_000427255.1",
                "taxid": 84023,
                "species_taxid": 84023,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9584,
                "matched_fragments": 1382,
                "total_fragments": 1451,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Clostridium ljungdahlii",
                "strain": "strain=DSM 13528",
                "accession": "GCA_000143685.1",
                "taxid": 1538,
                "species_taxid": 1538,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.056,
                "matched_fragments": 1348,
                "total_fragments": 1451,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Clostridium muellerianum",
                "strain": "strain=P21",
                "accession": "GCA_012926525.1",
                "taxid": 2716538,
                "species_taxid": 2716538,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3751,
                "matched_fragments": 436,
                "total_fragments": 1451,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium kluyveri",
                "strain": "strain=DSM 555",
                "accession": "GCA_000016505.1",
                "taxid": 1534,
                "species_taxid": 1534,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.815,
                "matched_fragments": 422,
                "total_fragments": 1451,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium kluyveri",
                "strain": "strain=NBRC 12016",
                "accession": "GCA_000010265.1",
                "taxid": 1534,
                "species_taxid": 1534,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8115,
                "matched_fragments": 417,
                "total_fragments": 1451,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium thailandense",
                "strain": "strain=PL3",
                "accession": "GCA_019207025.1",
                "taxid": 2794346,
                "species_taxid": 2794346,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9839,
                "matched_fragments": 353,
                "total_fragments": 1451,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Crassaminicella profunda",
                "strain": "strain=Ra1766H",
                "accession": "GCA_019884785.1",
                "taxid": 1286698,
                "species_taxid": 1286698,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8068,
                "matched_fragments": 70,
                "total_fragments": 1451,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 98.96,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000143685.1",
                "gtdb_species": "s__Clostridium_B ljungdahlii",
                "ani": 99.0395,
                "matched_fragments": 1349,
                "total_fragments": 1451,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.76",
                "min_intra_species_ani": "97.79",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 9,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001675165.1",
                "gtdb_species": "s__Clostridium_B ragsdalei",
                "ani": 94.7719,
                "matched_fragments": 1174,
                "total_fragments": 1451,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.18",
                "min_intra_species_ani": "98.18",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001636845.1",
                "gtdb_species": "s__Clostridium_B ljungdahlii_A",
                "ani": 94.3102,
                "matched_fragments": 1118,
                "total_fragments": 1451,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004006395.2",
                "gtdb_species": "s__Clostridium_B sp004006395",
                "ani": 93.9874,
                "matched_fragments": 1190,
                "total_fragments": 1451,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000633595.2",
                "gtdb_species": "s__Clostridium_AM drakei",
                "ani": 79.4289,
                "matched_fragments": 496,
                "total_fragments": 1451,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_AM",
                "ani_circumscription_radius": 96.092,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_017874415.1",
                "gtdb_species": "s__Clostridium_B algifaecis",
                "ani": 78.8707,
                "matched_fragments": 345,
                "total_fragments": 1451,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000016505.1",
                "gtdb_species": "s__Clostridium_B kluyveri",
                "ani": 78.8066,
                "matched_fragments": 423,
                "total_fragments": 1451,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.52",
                "min_intra_species_ani": "95.05",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002995845.1",
                "gtdb_species": "s__Clostridium_B luticellarii",
                "ani": 78.3706,
                "matched_fragments": 364,
                "total_fragments": 1451,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.16,
        "cell_length": 0.434,
        "doubling_h": 0.353,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 6.947,
        "genome_size": 4347962.571,
        "gc_content": 31.032,
        "coding_genes": 3833.5,
        "rRNA16S_genes": 9.0,
        "tRNA_genes": 67.0,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Clostridium",
        "autoethanogenum",
        "DSM",
        "10061"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}