{ "type": "genome", "identifier": "GCF_000488215.1", "organism": "Acinetobacter nectaris CIP 110549", "title": "Acinetobacter nectaris CIP 110549", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Broad Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000488215.1", "bioproject": "PRJNA224116", "biosample": "SAMN02335355", "wgs_master": "AYER00000000.1", "refseq_category": "reference genome", "taxid": "1392540", "species_taxid": "1219382", "organism_name": "Acinetobacter nectaris CIP 110549", "infraspecific_name": "strain=CIP 110549", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/10/29", "asm_name": "Acin_nect_CIP110549_V2", "asm_submitter": "Broad Institute", "gbrs_paired_asm": "GCA_000488215.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/488/215/GCF_000488215.1_Acin_nect_CIP110549_V2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2668938", "genome_size_ungapped": "2668173", "gc_percent": "36.500000", "replicon_count": "0", "scaffold_count": "29", "contig_count": "34", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000488215.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "2611", "protein_coding_gene_count": "2482", "non_coding_gene_count": "80", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-10-29", "dateModified": "2013-10-29", "datePublished": "2013-10-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter nectaris CIP 110549" ], "sample_taxid": [ "1392540" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.751 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2668938", "Number of Sequences": "29", "Longest Sequences (bp)": "1252772", "N50 (bp)": "485463", "Gap Ratio (%)": "0.028663", "GCcontent (%)": "36.7", "Number of CDSs": "2510", "Average Protein Length": "307.8", "Coding Ratio (%)": "86.8", "Number of rRNAs": "5", "Number of tRNAs": "67", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter nectaris", "strain": "strain=CIP 110549", "accession": "GCA_000488215.1", "taxid": 1219382, "species_taxid": 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95, "status": "below_threshold" }, { "organism_name": "Acinetobacter calcoaceticus", "strain": "strain=CIP 81.8", "accession": "GCA_000368965.1", "taxid": 471, "species_taxid": 471, "relation_to_type": "type", "validated": true, "ani": 78.9573, "matched_fragments": 211, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter brisouii", "strain": "strain=DSM 18516", "accession": "GCA_000931655.1", "taxid": 396323, "species_taxid": 396323, "relation_to_type": "type", "validated": true, "ani": 78.9464, "matched_fragments": 222, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter tandoii", "strain": "strain=CIP 107469", "accession": "GCA_000400735.1", "taxid": 202954, "species_taxid": 202954, "relation_to_type": "type", "validated": true, "ani": 78.7806, "matched_fragments": 204, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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2699469, "relation_to_type": "type", "validated": true, "ani": 78.441, "matched_fragments": 187, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter portensis", "strain": "strain=AC 877", "accession": "GCA_009372215.1", "taxid": 1839785, "species_taxid": 1839785, "relation_to_type": "type", "validated": true, "ani": 78.3091, "matched_fragments": 240, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter halotolerans", "strain": "strain=JCM 31009", "accession": "GCA_004208515.1", "taxid": 1752076, "species_taxid": 1752076, "relation_to_type": "type", "validated": true, "ani": 78.1456, "matched_fragments": 202, "total_fragments": 876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter chengduensis", "strain": "strain=WCHAc060005", "accession": "GCA_003664645.1", "taxid": 2420890, "species_taxid": 2420890, "relation_to_type": "type", 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