{ "type": "genome", "identifier": "GCF_000488255.1", "organism": "Acinetobacter indicus CIP 110367", "title": "Acinetobacter indicus CIP 110367", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Broad Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000488255.1", "bioproject": "PRJNA224116", "biosample": "SAMN02335352", "wgs_master": "AYET00000000.1", "refseq_category": "na", "taxid": "1341679", "species_taxid": "756892", "organism_name": "Acinetobacter indicus CIP 110367", "infraspecific_name": "strain=CIP 110367", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/10/29", "asm_name": "Acin_indi_CIP110367_V2", "asm_submitter": "Broad Institute", "gbrs_paired_asm": "GCA_000488255.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/488/255/GCF_000488255.1_Acin_indi_CIP110367_V2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3211639", "genome_size_ungapped": "3210203", "gc_percent": "45.500000", "replicon_count": "0", "scaffold_count": "17", "contig_count": "21", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000488255.1-RS_2024_12_23", "annotation_date": "2024-12-23", "total_gene_count": "3091", "protein_coding_gene_count": "2872", "non_coding_gene_count": "114", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-10-29", "dateModified": "2013-10-29", "datePublished": "2013-10-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter indicus CIP 110367" ], "sample_taxid": [ "1341679" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.909 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3211639", "Number of Sequences": "17", "Longest Sequences (bp)": "949323", "N50 (bp)": "800571", "Gap Ratio (%)": "0.044712", "GCcontent (%)": "45.4", "Number of CDSs": "2991", "Average Protein Length": "304.8", "Coding Ratio (%)": "85.2", "Number of rRNAs": "18", "Number of tRNAs": "83", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter indicus", "strain": "strain=CIP 110367", "accession": "GCA_000488255.1", "taxid": 756892, "species_taxid": 756892, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1061, 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"below_threshold" }, { "organism_name": "Acinetobacter variabilis", "strain": "strain=NIPH 2171", "accession": "GCA_000369625.1", "taxid": 70346, "species_taxid": 70346, "relation_to_type": "type", "validated": true, "ani": 81.8769, "matched_fragments": 626, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter schindleri", "strain": "strain=CIP 107287", "accession": "GCA_000368625.1", "taxid": 108981, "species_taxid": 108981, "relation_to_type": "type", "validated": true, "ani": 81.8746, "matched_fragments": 534, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter towneri", "strain": "strain=DSM 14962", "accession": "GCA_000688495.1", "taxid": 202956, "species_taxid": 202956, "relation_to_type": "type", "validated": true, "ani": 81.777, "matched_fragments": 577, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pseudolwoffii", "strain": "strain=ANC 5044", "accession": "GCA_002803605.1", "taxid": 2053287, "species_taxid": 2053287, "relation_to_type": "type", "validated": true, "ani": 81.502, "matched_fragments": 592, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=NCTC10308", "accession": "GCA_900444855.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 81.2597, "matched_fragments": 491, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pecorum", "strain": "strain=Sa1BUA6", "accession": "GCA_014837015.1", "taxid": 2762215, "species_taxid": 2762215, "relation_to_type": "type", "validated": true, "ani": 80.9521, "matched_fragments": 570, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter tandoii", "strain": "strain=CIP 107469", "accession": "GCA_000400735.1", "taxid": 202954, "species_taxid": 202954, "relation_to_type": "type", "validated": true, "ani": 80.5658, "matched_fragments": 462, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gandensis", "strain": "strain=ANC 4275", "accession": "GCA_001678755.1", "taxid": 1443941, "species_taxid": 1443941, "relation_to_type": "type", "validated": true, "ani": 80.4384, "matched_fragments": 441, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter tandoii", "strain": "strain=DSM 14970", "accession": "GCA_000621065.1", "taxid": 202954, "species_taxid": 202954, "relation_to_type": "type", "validated": true, "ani": 80.3606, "matched_fragments": 454, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter kanungonis", "strain": "strain=PS-1", "accession": "GCA_009939195.1", "taxid": 2699469, "species_taxid": 2699469, "relation_to_type": "type", "validated": true, "ani": 80.2252, "matched_fragments": 485, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter tianfuensis", "strain": "strain=WCHAc060012", "accession": "GCA_003611465.1", "taxid": 2419603, "species_taxid": 2419603, "relation_to_type": "type", "validated": true, "ani": 80.1474, "matched_fragments": 465, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter bouvetii", "strain": "strain=CIP 107468", "accession": "GCA_000368865.1", "taxid": 202951, "species_taxid": 202951, "relation_to_type": "type", "validated": true, "ani": 79.9286, "matched_fragments": 475, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter bouvetii", "strain": "strain=DSM 14964", "accession": "GCA_000373725.1", "taxid": 202951, "species_taxid": 202951, "relation_to_type": "type", "validated": true, "ani": 79.8398, "matched_fragments": 468, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=PartI-Abaumannii-RM8376", "accession": "GCA_022870045.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 79.6988, "matched_fragments": 312, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter proteolyticus", "strain": "strain=NIPH 809", "accession": "GCA_000367945.1", "taxid": 1776741, "species_taxid": 1776741, "relation_to_type": "type", "validated": true, "ani": 79.6478, "matched_fragments": 341, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pittii", "strain": "strain=CIP70.29", "accession": "GCA_024390955.1", "taxid": 48296, "species_taxid": 48296, "relation_to_type": "type", "validated": true, "ani": 79.638, 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0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Acinetobacter", "indicus", "CIP", "110367" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }