{
    "type": "genome",
    "identifier": "GCF_000493735.1",
    "organism": "Carnobacterium inhibens subsp. gilichinskyi",
    "title": "Carnobacterium inhibens subsp. gilichinskyi",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Florida",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000493735.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02604179",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1266845",
        "species_taxid": "147709",
        "organism_name": "Carnobacterium inhibens subsp. gilichinskyi",
        "infraspecific_name": "strain=WN1359",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/10/29",
        "asm_name": "ASM49373v1",
        "asm_submitter": "University of Florida",
        "gbrs_paired_asm": "GCA_000493735.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/493/735/GCF_000493735.1_ASM49373v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2497115",
        "genome_size_ungapped": "2497115",
        "gc_percent": "35.000000",
        "replicon_count": "6",
        "scaffold_count": "6",
        "contig_count": "6",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-03-03",
        "total_gene_count": "2401",
        "protein_coding_gene_count": "2267",
        "non_coding_gene_count": "103",
        "pubmed_id": "24285647"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-10-29",
    "dateModified": "2013-10-29",
    "datePublished": "2013-10-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Carnobacterium inhibens subsp. gilichinskyi"
        ],
        "sample_taxid": [
            "1266845"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.698 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2497115",
        "Number of Sequences": "6",
        "Longest Sequences (bp)": "2347813",
        "N50 (bp)": "2347813",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "35.2",
        "Number of CDSs": "2332",
        "Average Protein Length": "298.8",
        "Coding Ratio (%)": "83.7",
        "Number of rRNAs": "25",
        "Number of tRNAs": "74",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Carnobacterium inhibens subsp. gilichinskyi",
                "strain": "strain=WN1359",
                "accession": "GCA_000493735.1",
                "taxid": 1266845,
                "species_taxid": 147709,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 830,
                "total_fragments": 830,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Carnobacterium inhibens subsp. inhibens",
                "strain": "strain=K1",
                "accession": "GCA_000746825.1",
                "taxid": 1758721,
                "species_taxid": 147709,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.059,
                "matched_fragments": 731,
                "total_fragments": 830,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Carnobacterium viridans",
                "strain": "strain=MPL-11",
                "accession": "GCA_900102725.1",
                "taxid": 174587,
                "species_taxid": 174587,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.6718,
                "matched_fragments": 623,
                "total_fragments": 830,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Carnobacterium jeotgali",
                "strain": "strain=MS3",
                "accession": "GCA_000745125.1",
                "taxid": 545534,
                "species_taxid": 545534,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.6015,
                "matched_fragments": 589,
                "total_fragments": 830,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Carnobacterium jeotgali",
                "strain": "strain=MS3",
                "accession": "GCA_000708655.1",
                "taxid": 545534,
                "species_taxid": 545534,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.5081,
                "matched_fragments": 538,
                "total_fragments": 830,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Carnobacterium alterfunditum",
                "strain": "strain=pf4",
                "accession": "GCA_000744115.1",
                "taxid": 28230,
                "species_taxid": 28230,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1491,
                "matched_fragments": 507,
                "total_fragments": 830,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Carnobacterium pleistocenium",
                "strain": "strain=FTR1",
                "accession": "GCA_000744285.1",
                "taxid": 181073,
                "species_taxid": 181073,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0284,
                "matched_fragments": 533,
                "total_fragments": 830,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000746825.1",
                "gtdb_species": "s__Carnobacterium_A inhibens",
                "ani": 98.0361,
                "matched_fragments": 732,
                "total_fragments": 830,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Carnobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.16",
                "min_intra_species_ani": "98.07",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900102725.1",
                "gtdb_species": "s__Carnobacterium_A viridans",
                "ani": 85.688,
                "matched_fragments": 625,
                "total_fragments": 830,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Carnobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.44",
                "min_intra_species_ani": "98.44",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000745125.1",
                "gtdb_species": "s__Carnobacterium_A jeotgali",
                "ani": 84.5652,
                "matched_fragments": 588,
                "total_fragments": 830,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Carnobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.33",
                "min_intra_species_ani": "98.67",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000195575.1",
                "gtdb_species": "s__Carnobacterium_A sp000195575",
                "ani": 84.415,
                "matched_fragments": 608,
                "total_fragments": 830,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Carnobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000744115.1",
                "gtdb_species": "s__Carnobacterium_A alterfunditum",
                "ani": 82.1401,
                "matched_fragments": 505,
                "total_fragments": 830,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Carnobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.24",
                "min_intra_species_ani": "96.49",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000744285.1",
                "gtdb_species": "s__Carnobacterium_A pleistocenium",
                "ani": 82.0112,
                "matched_fragments": 535,
                "total_fragments": 830,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Carnobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.091,
        "cell_length": 0.257,
        "doubling_h": null,
        "growth_tmp": 24.6,
        "optimum_tmp": 30.0,
        "optimum_ph": 7.325,
        "genome_size": 2800984.6,
        "gc_content": 34.789,
        "coding_genes": 3384.0,
        "rRNA16S_genes": 6.0,
        "tRNA_genes": 59.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.111,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.888,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Carnobacterium",
        "inhibens",
        "subsp.",
        "gilichinskyi"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}