{
    "type": "genome",
    "identifier": "GCF_000496575.1",
    "organism": "Geobacillus thermodenitrificans subsp. thermodenitrificans DSM 465",
    "title": "Geobacillus thermodenitrificans subsp. thermodenitrificans DSM 465",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Nankai university",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000496575.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02386948",
        "wgs_master": "AYKT00000000.1",
        "refseq_category": "na",
        "taxid": "1413215",
        "species_taxid": "33940",
        "organism_name": "Geobacillus thermodenitrificans subsp. thermodenitrificans DSM 465",
        "infraspecific_name": "strain=DSM 465",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2013/11/12",
        "asm_name": "DSM465V1.0",
        "asm_submitter": "Nankai university",
        "gbrs_paired_asm": "GCA_000496575.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/496/575/GCF_000496575.1_DSM465V1.0",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3400546",
        "genome_size_ungapped": "3400546",
        "gc_percent": "49.000000",
        "replicon_count": "0",
        "scaffold_count": "76",
        "contig_count": "76",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000496575.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "3485",
        "protein_coding_gene_count": "3346",
        "non_coding_gene_count": "76",
        "pubmed_id": "24336381"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2013-11-12",
    "dateModified": "2013-11-12",
    "datePublished": "2013-11-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Geobacillus thermodenitrificans subsp. thermodenitrificans DSM 465"
        ],
        "sample_taxid": [
            "1413215"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.965 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3400546",
        "Number of Sequences": "76",
        "Longest Sequences (bp)": "457192",
        "N50 (bp)": "264274",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "49.0",
        "Number of CDSs": "3363",
        "Average Protein Length": "285.8",
        "Coding Ratio (%)": "84.8",
        "Number of rRNAs": "4",
        "Number of tRNAs": "63",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Geobacillus thermodenitrificans subsp. thermodenitrificans",
                "strain": "strain=DSM 465",
                "accession": "GCA_000496575.1",
                "taxid": 1511749,
                "species_taxid": 33940,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1100,
                "total_fragments": 1103,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Geobacillus subterraneus",
                "strain": "strain=KCTC 3922",
                "accession": "GCA_001618685.1",
                "taxid": 129338,
                "species_taxid": 129338,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.0766,
                "matched_fragments": 863,
                "total_fragments": 1103,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geobacillus kaustophilus",
                "strain": "strain=NBRC 102445",
                "accession": "GCA_000739955.1",
                "taxid": 1462,
                "species_taxid": 1462,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.1742,
                "matched_fragments": 770,
                "total_fragments": 1103,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geobacillus stearothermophilus",
                "strain": "strain=ATCC 12980",
                "accession": "GCA_001277805.1",
                "taxid": 1422,
                "species_taxid": 1422,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.1338,
                "matched_fragments": 660,
                "total_fragments": 1103,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geobacillus kaustophilus",
                "strain": "strain=NBRC 102445",
                "accession": "GCA_005160065.1",
                "taxid": 1462,
                "species_taxid": 1462,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.0366,
                "matched_fragments": 799,
                "total_fragments": 1103,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geobacillus icigianus",
                "strain": "strain=G1w1",
                "accession": "GCA_000750005.1",
                "taxid": 1430331,
                "species_taxid": 1430331,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.8849,
                "matched_fragments": 719,
                "total_fragments": 1103,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geobacillus jurassicus",
                "strain": "strain=NBRC 107829",
                "accession": "GCA_001544315.1",
                "taxid": 235932,
                "species_taxid": 235932,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.6885,
                "matched_fragments": 752,
                "total_fragments": 1103,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000496575.1",
                "gtdb_species": "s__Geobacillus thermodenitrificans",
                "ani": 100.0,
                "matched_fragments": 1100,
                "total_fragments": 1103,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Geobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.33",
                "min_intra_species_ani": "99.10",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 12,
                "status": "conclusive"
            },
            {
                "accession": "GCF_014679505.1",
                "gtdb_species": "s__Geobacillus sp002077765",
                "ani": 88.4742,
                "matched_fragments": 898,
                "total_fragments": 1103,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Geobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.81",
                "min_intra_species_ani": "97.63",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001618685.1",
                "gtdb_species": "s__Geobacillus subterraneus",
                "ani": 88.0766,
                "matched_fragments": 863,
                "total_fragments": 1103,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Geobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.50",
                "min_intra_species_ani": "98.68",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000445995.2",
                "gtdb_species": "s__Geobacillus sp000445995",
                "ani": 84.9998,
                "matched_fragments": 838,
                "total_fragments": 1103,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Geobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002809955.1",
                "gtdb_species": "s__Geobacillus sp002809955",
                "ani": 83.4331,
                "matched_fragments": 765,
                "total_fragments": 1103,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Geobacillus",
                "ani_circumscription_radius": 96.916,
                "mean_intra_species_ani": "97.67",
                "min_intra_species_ani": "97.25",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_900450595.1",
                "gtdb_species": "s__Geobacillus thermophilus",
                "ani": 83.2969,
                "matched_fragments": 757,
                "total_fragments": 1103,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Geobacillus",
                "ani_circumscription_radius": 96.9743,
                "mean_intra_species_ani": "97.77",
                "min_intra_species_ani": "97.20",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_001908025.1",
                "gtdb_species": "s__Geobacillus proteiniphilus",
                "ani": 83.0448,
                "matched_fragments": 759,
                "total_fragments": 1103,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Geobacillus",
                "ani_circumscription_radius": 95.9151,
                "mean_intra_species_ani": "98.36",
                "min_intra_species_ani": "98.36",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000750005.1",
                "gtdb_species": "s__Geobacillus icigianus",
                "ani": 82.883,
                "matched_fragments": 720,
                "total_fragments": 1103,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Geobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.70",
                "min_intra_species_ani": "96.51",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_001544315.1",
                "gtdb_species": "s__Geobacillus jurassicus",
                "ani": 82.6885,
                "matched_fragments": 752,
                "total_fragments": 1103,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Geobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000948285.1",
                "gtdb_species": "s__Geobacillus thermoleovorans_A",
                "ani": 82.4218,
                "matched_fragments": 803,
                "total_fragments": 1103,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Geobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.57",
                "min_intra_species_ani": "95.98",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.071,
        "cell_length": 0.565,
        "doubling_h": -0.349,
        "growth_tmp": 57.5,
        "optimum_tmp": 63.75,
        "optimum_ph": 6.75,
        "genome_size": 3578607.818,
        "gc_content": 47.399,
        "coding_genes": 3407.6,
        "rRNA16S_genes": 10.0,
        "tRNA_genes": 89.25,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": 0.0,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 1.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Geobacillus",
        "thermodenitrificans",
        "subsp.",
        "thermodenitrificans",
        "DSM",
        "465"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}