{ "type": "genome", "identifier": "GCF_000497205.1", "organism": "Saccharopolyspora rectivirgula DSM 43747", "title": "Saccharopolyspora rectivirgula DSM 43747", "description": "na", "data type": "Genome sequencing and assembly", "organization": "uppasala University & Jawaharlal Nehru University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000497205.1", "bioproject": "PRJNA224116", "biosample": "SAMN02472042", "wgs_master": "AYJW00000000.1", "refseq_category": "na", "taxid": "1283279", "species_taxid": "28042", "organism_name": "Saccharopolyspora rectivirgula DSM 43747", "infraspecific_name": "strain=DSM 43747", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/11/18", "asm_name": "SREG", "asm_submitter": "uppasala University & Jawaharlal Nehru University", "gbrs_paired_asm": "GCA_000497205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/497/205/GCF_000497205.1_SREG", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3977051", "genome_size_ungapped": "3977051", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "182", "contig_count": "182", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000497205.1-RS_2024_08_01", "annotation_date": "2024-08-01", "total_gene_count": "3849", "protein_coding_gene_count": "3696", "non_coding_gene_count": "68", "pubmed_id": "24407634" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-11-18", "dateModified": "2013-11-18", "datePublished": "2013-11-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Saccharopolyspora rectivirgula DSM 43747" ], "sample_taxid": [ "1283279" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.085 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3977051", "Number of Sequences": "182", "Longest Sequences (bp)": "151103", "N50 (bp)": "52597", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.9", "Number of CDSs": "3660", "Average Protein Length": "305.9", "Coding Ratio (%)": "84.5", "Number of rRNAs": "1", "Number of tRNAs": "53", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Saccharopolyspora rectivirgula", "strain": "strain=DSM 43747", "accession": "GCA_000497205.1", "taxid": 28042, "species_taxid": 28042, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1240, "total_fragments": 1250, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Saccharopolyspora hordei", "strain": "strain=DSM 44065", "accession": "GCA_013410345.1", "taxid": 1838, "species_taxid": 1838, "relation_to_type": "type", "validated": true, "ani": 81.7816, "matched_fragments": 874, "total_fragments": 1250, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora subtropica", "strain": "strain=CGMCC 4.7206", "accession": "GCA_014646075.1", "taxid": 1530170, "species_taxid": 1530170, "relation_to_type": "type", "validated": true, "ani": 81.4857, "matched_fragments": 814, "total_fragments": 1250, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora hirsuta", "strain": "strain=VKM Ac-666", "accession": "GCA_008630535.1", "taxid": 1837, "species_taxid": 1837, "relation_to_type": "type", "validated": true, 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"matched_fragments": 839, "total_fragments": 1250, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora elongata", "strain": "strain=7K502", "accession": "GCA_004348985.1", "taxid": 2530387, "species_taxid": 2530387, "relation_to_type": "type", "validated": true, "ani": 81.1502, "matched_fragments": 837, "total_fragments": 1250, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora spinosa", "strain": "strain=DSM 44228", "accession": "GCA_002846475.1", "taxid": 60894, "species_taxid": 60894, "relation_to_type": "type", "validated": true, "ani": 81.0585, "matched_fragments": 797, "total_fragments": 1250, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora spinosa", "strain": "strain=NRRL 18395", "accession": "GCA_000194155.1", "taxid": 60894, "species_taxid": 60894, "relation_to_type": "type", "validated": true, "ani": 81.0474, "matched_fragments": 787, "total_fragments": 1250, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora flava", "strain": "strain=DSM 44771", "accession": "GCA_900116135.1", "taxid": 95161, "species_taxid": 95161, "relation_to_type": "type", "validated": true, "ani": 80.8894, "matched_fragments": 767, "total_fragments": 1250, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora phatthalungensis", "strain": "strain=DSM 45584", "accession": "GCA_014203395.1", "taxid": 664693, "species_taxid": 664693, "relation_to_type": "type", "validated": true, "ani": 80.6709, "matched_fragments": 761, "total_fragments": 1250, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora erythraea", "strain": "strain=NRRL 2338", "accession": "GCA_000171635.1", "taxid": 1836, "species_taxid": 1836, "relation_to_type": "type", "validated": true, "ani": 80.6325, "matched_fragments": 794, "total_fragments": 1250, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora erythraea", "strain": "strain=NRRL 2338", "accession": "GCA_000062885.1", "taxid": 1836, "species_taxid": 1836, "relation_to_type": "type", "validated": true, "ani": 80.6139, "matched_fragments": 813, "total_fragments": 1250, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora erythraea", "strain": "strain=DSM 40517", "accession": "GCA_002564065.1", "taxid": 1836, "species_taxid": 1836, "relation_to_type": "type", "validated": true, "ani": 80.5938, "matched_fragments": 820, "total_fragments": 1250, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000497205.1", "gtdb_species": "s__Saccharopolyspora rectivirgula", "ani": 100.0, "matched_fragments": 1240, "total_fragments": 1250, "gtdb_taxonomy": 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