{ "type": "genome", "identifier": "GCF_000504245.1", "organism": "Haloechinothrix halophila YIM 93223", "title": "Haloechinothrix halophila YIM 93223", "description": "na", "data type": "Genome sequencing and assembly", "organization": "JGI", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000504245.1", "bioproject": "PRJNA224116", "biosample": "SAMN02597165", "wgs_master": "AZAK00000000.1", "refseq_category": "reference genome", "taxid": "592678", "species_taxid": "1069073", "organism_name": "Haloechinothrix halophila YIM 93223", "infraspecific_name": "strain=YIM 93223", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/12/05", "asm_name": "ASM50424v1", "asm_submitter": "JGI", "gbrs_paired_asm": "GCA_000504245.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/504/245/GCF_000504245.1_ASM50424v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5551297", "genome_size_ungapped": "5550897", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "5", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000504245.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "5176", "protein_coding_gene_count": "5053", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-12-05", "dateModified": "2013-12-05", "datePublished": "2013-12-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Haloechinothrix halophila YIM 93223" ], "sample_taxid": [ "592678" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [ "None" ], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.513 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5551297", "Number of Sequences": "1", "Longest Sequences (bp)": "5551297", "N50 (bp)": "5551297", "Gap Ratio (%)": "0.007206", "GCcontent (%)": "67.8", "Number of CDSs": "5208", "Average Protein Length": "318.9", "Coding Ratio (%)": "89.7", "Number of rRNAs": "6", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Haloechinothrix halophila", "strain": "strain=YIM 93223", "accession": "GCA_000504245.1", "taxid": 1069073, "species_taxid": 1069073, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1850, "total_fragments": 1850, 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