{ "type": "genome", "identifier": "GCF_000511955.1", "organism": "[Clostridium] ultunense DSM 10521", "title": "[Clostridium] ultunense DSM 10521", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Plant Physiology and Ecology, SIBS, CAS.", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000511955.1", "bioproject": "PRJNA224116", "biosample": "SAMN02597372", "wgs_master": "AZSU00000000.1", "refseq_category": "reference genome", "taxid": "865861", "species_taxid": "45497", "organism_name": "[Clostridium] ultunense DSM 10521", "infraspecific_name": "strain=DSM 10521", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/12/27", "asm_name": "clostridium ultunense", "asm_submitter": "Institute of Plant Physiology and Ecology, SIBS, CAS.", "gbrs_paired_asm": "GCA_000511955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/511/955/GCF_000511955.1_clostridium_ultunense", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3216692", "genome_size_ungapped": "3127642", "gc_percent": "32.500000", "replicon_count": "0", "scaffold_count": "12", "contig_count": "12", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000511955.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3215", "protein_coding_gene_count": "3051", "non_coding_gene_count": "79", "pubmed_id": "24504003" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-12-27", "dateModified": "2013-12-27", "datePublished": "2013-12-27", "_annotation": { "sample_count": 1, "sample_organism": [ "[Clostridium] ultunense DSM 10521" ], "sample_taxid": [ "865861" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.859 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3216692", "Number of Sequences": "12", "Longest Sequences (bp)": "876342", "N50 (bp)": "843642", "Gap Ratio (%)": "2.769211", "GCcontent (%)": "32.4", "Number of CDSs": "3065", "Average Protein Length": "292.0", "Coding Ratio (%)": "83.5", "Number of rRNAs": "5", "Number of tRNAs": "64", "Number of CRISPRs": "9" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Keratinibaculum paraultunense", "strain": "strain=KD-1", "accession": "GCA_016767175.1", "taxid": 1278232, "species_taxid": 1278232, "relation_to_type": "type", "validated": true, "ani": 78.4353, "matched_fragments": 268, "total_fragments": 1066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Keratinibaculum paraultunense", "strain": "strain=DSM 26752", "accession": "GCA_004343355.1", "taxid": 1278232, "species_taxid": 1278232, "relation_to_type": "type", "validated": true, "ani": 78.0337, "matched_fragments": 260, "total_fragments": 1066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tissierella praeacuta", "strain": "strain=NCTC11158", "accession": "GCA_900460335.1", "taxid": 43131, "species_taxid": 43131, "relation_to_type": "type", "validated": true, "ani": 77.2322, "matched_fragments": 131, "total_fragments": 1066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tissierella pigra", "strain": "strain=WCA3-693-APC-4", "accession": "GCA_009695605.1", "taxid": 2607614, "species_taxid": 2607614, "relation_to_type": "type", "validated": true, "ani": 76.9384, "matched_fragments": 161, "total_fragments": 1066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tissierella simiarum", "strain": "strain=MSJ-40", "accession": "GCA_018917865.1", "taxid": 2841534, "species_taxid": 2841534, "relation_to_type": "type", "validated": true, "ani": 76.8533, "matched_fragments": 179, "total_fragments": 1066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tissierella praeacuta", "strain": "strain=DSM 18095", "accession": "GCA_900128955.1", "taxid": 43131, "species_taxid": 43131, "relation_to_type": "type", "validated": true, "ani": 76.8373, "matched_fragments": 128, "total_fragments": 1066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Defluviitalea phaphyphila", "strain": "strain=Alg1", "accession": "GCA_001466305.1", "taxid": 1473580, "species_taxid": 1473580, "relation_to_type": "type", "validated": true, "ani": 75.8015, "matched_fragments": 60, "total_fragments": 1066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium beijerinckii", "strain": "strain=DSM 791", "accession": "GCA_018223745.1", "taxid": 1520, "species_taxid": 1520, "relation_to_type": "suspected-type", "validated": true, "ani": 75.4103, "matched_fragments": 75, "total_fragments": 1066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium diolis", "strain": "strain=DSM 15410", "accession": "GCA_008705175.1", "taxid": 223919, "species_taxid": 223919, "relation_to_type": "suspected-type", "validated": true, "ani": 75.3908, "matched_fragments": 77, "total_fragments": 1066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaeromicrobium sediminis", "strain": "strain=DY2726D", "accession": "GCA_002270055.1", "taxid": 1478221, "species_taxid": 1478221, "relation_to_type": "type", "validated": true, "ani": 75.3274, "matched_fragments": 59, "total_fragments": 1066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium beijerinckii", "strain": "strain=DSM 791", "accession": "GCA_002006445.1", "taxid": 1520, "species_taxid": 1520, "relation_to_type": "suspected-type", "validated": true, "ani": 74.9988, "matched_fragments": 66, "total_fragments": 1066, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium mobile", "strain": "strain=MSJ-11", "accession": "GCA_018918285.1", "taxid": 2841512, "species_taxid": 2841512, "relation_to_type": "type", "validated": true, "ani": 74.9266, "matched_fragments": 52, "total_fragments": 1066, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000511955.1", "gtdb_species": "s__Schnuerera ultunensis", "ani": 99.9998, "matched_fragments": 1056, "total_fragments": 1066, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Tepidimicrobiaceae;g__Schnuerera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.51", "min_intra_species_ani": "99.51", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_900106765.1", "gtdb_species": "s__Tepidimicrobium xylanilyticum", "ani": 78.7029, "matched_fragments": 338, "total_fragments": 1066, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Tepidimicrobiaceae;g__Tepidimicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012728595.1", "gtdb_species": "s__Tepidimicrobium sp012728595", "ani": 78.1277, "matched_fragments": 253, "total_fragments": 1066, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Tepidimicrobiaceae;g__Tepidimicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002398845.1", "gtdb_species": "s__Mt11 sp002398845", "ani": 78.0893, "matched_fragments": 200, "total_fragments": 1066, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Tepidimicrobiaceae;g__Mt11", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001282665.1", "gtdb_species": "s__Mt11 sp001282665", "ani": 78.0735, "matched_fragments": 332, "total_fragments": 1066, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Tepidimicrobiaceae;g__Mt11", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_012798935.1", "gtdb_species": "s__JAAZMG01 sp012798935", "ani": 77.8984, "matched_fragments": 209, "total_fragments": 1066, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Tepidimicrobiaceae;g__JAAZMG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012728725.1", "gtdb_species": "s__JAAYEM01 sp012728725", "ani": 77.5648, "matched_fragments": 213, "total_fragments": 1066, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Tepidimicrobiaceae;g__JAAYEM01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012799055.1", "gtdb_species": "s__JAAZMA01 sp012799055", "ani": 77.3889, "matched_fragments": 196, "total_fragments": 1066, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Tepidimicrobiaceae;g__JAAZMA01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012518955.1", "gtdb_species": "s__DUNJ01 sp012518955", "ani": 77.353, "matched_fragments": 170, "total_fragments": 1066, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Tepidimicrobiaceae;g__DUNJ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012735405.1", "gtdb_species": "s__JAAYFE01 sp012735405", "ani": 76.9632, "matched_fragments": 115, "total_fragments": 1066, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Tepidimicrobiaceae;g__JAAYFE01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012728365.1", "gtdb_species": "s__JAAYFE01 sp012728365", "ani": 76.9631, "matched_fragments": 146, "total_fragments": 1066, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Tepidimicrobiaceae;g__JAAYFE01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012735215.1", "gtdb_species": "s__JAAYHX01 sp012735215", "ani": 76.8565, "matched_fragments": 106, "total_fragments": 1066, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Tepidimicrobiaceae;g__JAAYHX01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002270055.1", "gtdb_species": "s__Anaeromicrobium sediminis", "ani": 75.3776, "matched_fragments": 57, "total_fragments": 1066, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Thermotaleaceae;g__Anaeromicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": -0.302, "doubling_h": 1.681, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": 7.0, "genome_size": 3216692.0, "gc_content": 32.8, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 1.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 0.0, "thermophilic_range_tmp": 1.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "[Clostridium]", "ultunense", "DSM", "10521" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }