{ "type": "genome", "identifier": "GCF_000512205.2", "organism": "Sphingomonas sanxanigenens DSM 19645 = NX02", "title": "Sphingomonas sanxanigenens DSM 19645 = NX02", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Nankai University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000512205.2", "bioproject": "PRJNA224116", "biosample": "SAMN02641489", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1123269", "species_taxid": "397260", "organism_name": "Sphingomonas sanxanigenens DSM 19645 = NX02", "infraspecific_name": "strain=NX02", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2015/05/15", "asm_name": "ASM51220v2", "asm_submitter": "Nankai University", "gbrs_paired_asm": "GCA_000512205.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/512/205/GCF_000512205.2_ASM51220v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6580298", "genome_size_ungapped": "6580298", "gc_percent": "66.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000512205.2-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "6254", "protein_coding_gene_count": "6090", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2015-05-15", "dateModified": "2015-05-15", "datePublished": "2015-05-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingomonas sanxanigenens DSM 19645 = NX02" ], "sample_taxid": [ "1123269" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [ "missing" ], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.789 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6580298", "Number of Sequences": "2", "Longest Sequences (bp)": "6205897", "N50 (bp)": "6205897", "Gap Ratio (%)": "0.000015", "GCcontent (%)": "66.7", "Number of CDSs": "6248", "Average Protein Length": "318.4", "Coding Ratio (%)": "90.7", "Number of rRNAs": "9", "Number of tRNAs": "67", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingomonas sanxanigenens", "strain": "strain=NX02", "accession": "GCA_000512205.2", "taxid": 397260, 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}, { "organism_name": "Sphingomonas metalli", "strain": "strain=CGMCC 1.15330", "accession": "GCA_014641735.1", "taxid": 1779358, "species_taxid": 1779358, "relation_to_type": "type", "validated": true, "ani": 79.1559, "matched_fragments": 553, "total_fragments": 2192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas cavernae", "strain": "strain=K2R01-6", "accession": "GCA_003590775.1", "taxid": 2320861, "species_taxid": 2320861, "relation_to_type": "type", "validated": true, "ani": 79.1171, "matched_fragments": 522, "total_fragments": 2192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas oleivorans", "strain": "strain=FW-11", "accession": "GCA_003050615.1", "taxid": 1735121, "species_taxid": 1735121, "relation_to_type": "type", "validated": true, "ani": 79.0835, "matched_fragments": 515, "total_fragments": 2192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas flavalba", 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"GCA_900113315.1", "taxid": 1166337, "species_taxid": 1166337, "relation_to_type": "type", "validated": true, "ani": 79.0462, "matched_fragments": 565, "total_fragments": 2192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas solaris", "strain": "strain=R4DWN", "accession": "GCA_007785815.1", "taxid": 2529389, "species_taxid": 2529389, "relation_to_type": "type", "validated": true, "ani": 78.9929, "matched_fragments": 536, "total_fragments": 2192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas laterariae", "strain": "strain=LNB2", "accession": "GCA_900188165.1", "taxid": 861865, "species_taxid": 861865, "relation_to_type": "type", "validated": true, "ani": 78.9892, "matched_fragments": 602, "total_fragments": 2192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas horti", "strain": "strain=MAH-20", "accession": "GCA_009753715.1", "taxid": 2682842, "species_taxid": 2682842, 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