{ "type": "genome", "identifier": "GCF_000512355.1", "organism": "Legionella oakridgensis ATCC 33761 = DSM 21215", "title": "Legionella oakridgensis ATCC 33761 = DSM 21215", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Georg-August-University of Goettingen, Genomics and Applied Microbiology, G\u00f6ttinger Genomics Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000512355.1", "bioproject": "PRJNA224116", "biosample": "SAMN02641506", "wgs_master": "na", "refseq_category": "na", "taxid": "1268635", "species_taxid": "29423", "organism_name": "Legionella oakridgensis ATCC 33761 = DSM 21215", "infraspecific_name": "strain=ATCC 33761 = DSM 21215; OR-10", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2013/12/31", "asm_name": "ASM51235v1", "asm_submitter": "Georg-August-University of Goettingen, Genomics and Applied Microbiology, G\u00f6ttinger Genomics Laboratory", "gbrs_paired_asm": "GCA_000512355.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/512/355/GCF_000512355.1_ASM51235v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2773209", "genome_size_ungapped": "2773209", "gc_percent": "41.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000512355.1-RS_2024_03_27", "annotation_date": "2024-03-27", "total_gene_count": "2823", "protein_coding_gene_count": "2566", "non_coding_gene_count": "57", "pubmed_id": "23932911" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2013-12-31", "dateModified": "2013-12-31", "datePublished": "2013-12-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Legionella oakridgensis ATCC 33761 = DSM 21215" ], "sample_taxid": [ "1268635" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [ "missing" ], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.785 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2773209", "Number of Sequences": "2", "Longest Sequences (bp)": "2722964", "N50 (bp)": "2722964", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.9", "Number of CDSs": "2881", "Average Protein Length": "281.3", "Coding Ratio (%)": "87.7", "Number of rRNAs": "9", "Number of tRNAs": "42", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Legionella oakridgensis", "strain": "strain=ATCC 33761 = DSM 21215; OR-10", "accession": "GCA_000512355.1", "taxid": 29423, "species_taxid": 29423, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 922, "total_fragments": 923, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella oakridgensis", "strain": "strain=ATCC 33761", "accession": "GCA_001648605.1", "taxid": 29423, "species_taxid": 29423, "relation_to_type": "type", "validated": true, "ani": 99.9104, "matched_fragments": 882, "total_fragments": 923, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella oakridgensis", "strain": "strain=Oak Ridge-10", "accession": "GCA_001467925.1", "taxid": 29423, "species_taxid": 29423, "relation_to_type": "type", "validated": true, "ani": 99.9078, "matched_fragments": 872, "total_fragments": 923, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella nagasakiensis", "strain": "strain=JCM 15315", "accession": "GCA_900639915.1", "taxid": 535290, "species_taxid": 535290, "relation_to_type": "type", "validated": true, "ani": 81.421, "matched_fragments": 607, "total_fragments": 923, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella bozemanae", "strain": "strain=WIGA", "accession": "GCA_001467045.1", "taxid": 447, "species_taxid": 447, "relation_to_type": "type", "validated": true, "ani": 78.2798, "matched_fragments": 78, "total_fragments": 923, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella israelensis", "strain": "strain=NCTC12010", "accession": "GCA_900452605.1", "taxid": 454, "species_taxid": 454, "relation_to_type": "type", "validated": true, "ani": 78.2557, "matched_fragments": 66, "total_fragments": 923, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella bozemanae", "strain": "strain=WIGA", "accession": "GCA_900640135.1", "taxid": 447, "species_taxid": 447, "relation_to_type": "type", "validated": true, "ani": 78.2442, "matched_fragments": 82, "total_fragments": 923, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella steelei", "strain": "strain=IMVS3376", "accession": "GCA_001468005.1", "taxid": 947033, "species_taxid": 947033, "relation_to_type": "type", "validated": true, "ani": 77.9254, "matched_fragments": 80, "total_fragments": 923, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella septentrionalis", "strain": "strain=km711", "accession": "GCA_003989745.1", "taxid": 2498109, "species_taxid": 2498109, "relation_to_type": "type", "validated": true, "ani": 77.0576, "matched_fragments": 124, "total_fragments": 923, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella fairfieldensis", "strain": "strain=1725-Aus-E", "accession": "GCA_900640125.1", "taxid": 45064, "species_taxid": 45064, "relation_to_type": "type", "validated": true, "ani": 77.013, "matched_fragments": 85, "total_fragments": 923, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000512355.1", "gtdb_species": "s__Legionella_A oakridgensis", "ani": 100.0, "matched_fragments": 923, "total_fragments": 923, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.85", "min_intra_species_ani": "99.51", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.90", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCF_900639915.1", "gtdb_species": "s__Legionella_A nagasakiensis", "ani": 81.4314, "matched_fragments": 606, "total_fragments": 923, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000953655.1", "gtdb_species": "s__Tatlockia hackeliae", "ani": 78.9606, "matched_fragments": 86, "total_fragments": 923, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.91", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900452385.1", "gtdb_species": "s__Tatlockia donaldsonii", "ani": 78.7312, "matched_fragments": 97, "total_fragments": 923, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004571175.1", "gtdb_species": "s__Legionella_D israelensis", "ani": 78.439, "matched_fragments": 68, "total_fragments": 923, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.34", "min_intra_species_ani": "97.95", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.86", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_001467525.1", "gtdb_species": "s__Legionella anisa", "ani": 78.3474, "matched_fragments": 79, "total_fragments": 923, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.76", "min_intra_species_ani": "99.61", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_900637635.1", "gtdb_species": "s__Tatlockia jordanis", "ani": 78.3071, "matched_fragments": 74, "total_fragments": 923, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.91", "min_intra_species_ani": "99.59", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.98", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_001648595.1", "gtdb_species": "s__Legionella bozemanae", "ani": 78.0804, "matched_fragments": 77, "total_fragments": 923, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.47", "min_intra_species_ani": "97.91", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.91", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_014109805.1", "gtdb_species": "s__Legionella sp014109805", "ani": 77.981, "matched_fragments": 84, "total_fragments": 923, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900635815.1", "gtdb_species": "s__Legionella cherrii", "ani": 77.9643, "matched_fragments": 69, "total_fragments": 923, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.87", "min_intra_species_ani": "99.61", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.97", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001468005.1", "gtdb_species": "s__Legionella steelei", "ani": 77.9254, "matched_fragments": 80, "total_fragments": 923, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.95", "min_intra_species_ani": "98.94", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900640115.1", "gtdb_species": "s__Legionella_A yabuuchiae", "ani": 77.7681, "matched_fragments": 98, "total_fragments": 923, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.93", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003989745.1", "gtdb_species": "s__Legionella_A septentrionalis", "ani": 77.0576, "matched_fragments": 124, "total_fragments": 923, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.39", "min_intra_species_ani": "99.22", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 4, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.523, "cell_length": 0.301, "doubling_h": 0.38, "growth_tmp": 37.0, "optimum_tmp": 33.77, "optimum_ph": 6.9, "genome_size": 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