{
    "type": "genome",
    "identifier": "GCF_000512735.1",
    "organism": "Thermocrinis ruber",
    "title": "Thermocrinis ruber",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "JGI",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000512735.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02769647",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "75906",
        "species_taxid": "75906",
        "organism_name": "Thermocrinis ruber",
        "infraspecific_name": "strain=DSM 23557",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/01/03",
        "asm_name": "ASM51273v1",
        "asm_submitter": "JGI",
        "gbrs_paired_asm": "GCA_000512735.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/512/735/GCF_000512735.1_ASM51273v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1521037",
        "genome_size_ungapped": "1521037",
        "gc_percent": "45.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000512735.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "1675",
        "protein_coding_gene_count": "1613",
        "non_coding_gene_count": "50",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-01-03",
    "dateModified": "2014-01-03",
    "datePublished": "2014-01-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thermocrinis ruber"
        ],
        "sample_taxid": [
            "75906"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.426 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1521037",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "1521037",
        "N50 (bp)": "1521037",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "45.2",
        "Number of CDSs": "1614",
        "Average Protein Length": "300.9",
        "Coding Ratio (%)": "95.8",
        "Number of rRNAs": "3",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "6"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Thermocrinis ruber",
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                "accession": "GCA_000512735.1",
                "taxid": 75906,
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                "relation_to_type": "type",
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                "ani": 100.0,
                "matched_fragments": 507,
                "total_fragments": 507,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Hydrogenobacter hydrogenophilus",
                "strain": "strain=DSM 2913",
                "accession": "GCA_900215655.1",
                "taxid": 35835,
                "species_taxid": 35835,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9742,
                "matched_fragments": 61,
                "total_fragments": 507,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrogenobacter thermophilus",
                "strain": "strain=TK-6",
                "accession": "GCA_000010785.1",
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                "species_taxid": 940,
                "relation_to_type": "type",
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                "total_fragments": 507,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrogenobacter thermophilus",
                "strain": "strain=TK-6",
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                "species_taxid": 940,
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                "validated": true,
                "ani": 76.7078,
                "matched_fragments": 68,
                "total_fragments": 507,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000512735.1",
                "gtdb_species": "s__Thermocrinis ruber",
                "ani": 100.0,
                "matched_fragments": 507,
                "total_fragments": 507,
                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Aquificales;f__Aquificaceae;g__Thermocrinis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_011375435.1",
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                "matched_fragments": 389,
                "total_fragments": 507,
                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Aquificales;f__Aquificaceae;g__Thermocrinis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009903855.1",
                "gtdb_species": "s__Thermocrinis sp009903855",
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                "matched_fragments": 255,
                "total_fragments": 507,
                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Aquificales;f__Aquificaceae;g__Thermocrinis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018771605.1",
                "gtdb_species": "s__UBA11096 sp003534055",
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                "total_fragments": 507,
                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Aquificales;f__Aquificaceae;g__UBA11096",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.57",
                "min_intra_species_ani": "98.52",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000702425.1",
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                "matched_fragments": 144,
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                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Aquificales;f__Aquificaceae;g__Thermocrinis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_011006175.1",
                "gtdb_species": "s__UBA11096 sp011006175",
                "ani": 76.8451,
                "matched_fragments": 76,
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                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Aquificales;f__Aquificaceae;g__UBA11096",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000010785.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Aquificales;f__Aquificaceae;g__Hydrogenobacter",
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                "mean_intra_species_ani": "97.53",
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                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
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            },
            {
                "accession": "GCA_011054805.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Aquificales;f__Aquificaceae;g__UBA11096",
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                "mean_intra_species_ani": "99.69",
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                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.291,
        "cell_length": 0.221,
        "doubling_h": 0.071,
        "growth_tmp": 79.95,
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        "optimum_ph": 6.2,
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        "gc_content": 45.2,
        "coding_genes": 1604.333,
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        "gram_stain": 0.0,
        "sporulation": 0.0,
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        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Thermocrinis",
        "ruber"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}