{
    "type": "genome",
    "identifier": "GCF_000513855.1",
    "organism": "Desulfurococcus amylolyticus Z-533",
    "title": "Desulfurococcus amylolyticus Z-533",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000513855.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02597199",
        "wgs_master": "AZUU00000000.1",
        "refseq_category": "na",
        "taxid": "1150674",
        "species_taxid": "94694",
        "organism_name": "Desulfurococcus amylolyticus Z-533",
        "infraspecific_name": "strain=Z-533",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/01/07",
        "asm_name": "ASM51385v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000513855.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/513/855/GCF_000513855.1_ASM51385v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "1307099",
        "genome_size_ungapped": "1306999",
        "gc_percent": "45.000000",
        "replicon_count": "0",
        "scaffold_count": "1",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000513855.1-RS_2024_03_29",
        "annotation_date": "2024-03-29",
        "total_gene_count": "1437",
        "protein_coding_gene_count": "1378",
        "non_coding_gene_count": "52",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-01-07",
    "dateModified": "2014-01-07",
    "datePublished": "2014-01-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Desulfurococcus amylolyticus Z-533"
        ],
        "sample_taxid": [
            "1150674"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "None"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Russia"
        ],
        "sample_host_location_id": [],
        "data_size": "0.372 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1307099",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "1307099",
        "N50 (bp)": "1307099",
        "Gap Ratio (%)": "0.007727",
        "GCcontent (%)": "45.2",
        "Number of CDSs": "1392",
        "Average Protein Length": "275.0",
        "Coding Ratio (%)": "87.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "32",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Desulfurococcus amylolyticus",
                "strain": "strain=Z-533",
                "accession": "GCA_000513855.1",
                "taxid": 94694,
                "species_taxid": 94694,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 435,
                "total_fragments": 435,
                "ani_threshold": 95,
                "status": "conclusive"
            }
        ],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000513855.1",
                "gtdb_species": "s__Desulfurococcus amylolyticus",
                "ani": 100.0,
                "matched_fragments": 435,
                "total_fragments": 435,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Thermoproteia;o__Sulfolobales;f__Desulfurococcaceae;g__Desulfurococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.44",
                "min_intra_species_ani": "95.93",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.0,
        "cell_length": 0.0,
        "doubling_h": null,
        "growth_tmp": 81.0,
        "optimum_tmp": 83.571,
        "optimum_ph": 6.25,
        "genome_size": 1368526.818,
        "gc_content": 45.05,
        "coding_genes": 1417.167,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 46.5,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 1.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Desulfurococcus",
        "amylolyticus",
        "Z-533"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}