{
    "type": "genome",
    "identifier": "GCF_000514455.1",
    "organism": "Salinispora oceanensis",
    "title": "Salinispora oceanensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000514455.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02597229",
        "wgs_master": "AZVY00000000.1",
        "refseq_category": "na",
        "taxid": "1050199",
        "species_taxid": "1050199",
        "organism_name": "Salinispora oceanensis",
        "infraspecific_name": "strain=CNT-138",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/01/07",
        "asm_name": "ASM51445v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_000514455.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/514/455/GCF_000514455.1_ASM51445v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5408810",
        "genome_size_ungapped": "5405739",
        "gc_percent": "70.000000",
        "replicon_count": "0",
        "scaffold_count": "51",
        "contig_count": "56",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000514455.1-RS_2024_11_06",
        "annotation_date": "2024-11-06",
        "total_gene_count": "4954",
        "protein_coding_gene_count": "4751",
        "non_coding_gene_count": "62",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-01-07",
    "dateModified": "2014-01-07",
    "datePublished": "2014-01-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Salinispora oceanensis"
        ],
        "sample_taxid": [
            "1050199"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.472 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5408810",
        "Number of Sequences": "51",
        "Longest Sequences (bp)": "1087953",
        "N50 (bp)": "325160",
        "Gap Ratio (%)": "0.058719",
        "GCcontent (%)": "69.8",
        "Number of CDSs": "4880",
        "Average Protein Length": "320.4",
        "Coding Ratio (%)": "86.7",
        "Number of rRNAs": "5",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1773,
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                "status": "conclusive"
            },
            {
                "organism_name": "Salinispora oceanensis",
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            {
                "organism_name": "Salinispora vitiensis",
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            {
                "organism_name": "Salinispora vitiensis",
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                "status": "below_threshold"
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            {
                "organism_name": "Salinispora pacifica",
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                "accession": "GCA_000514775.1",
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                "species_taxid": 351187,
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                "ani_threshold": 95,
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            },
            {
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                "strain": "strain=CNY-202",
                "accession": "GCA_000484695.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
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                "status": "below_threshold"
            },
            {
                "organism_name": "Salinispora mooreana",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Micromonospora phytophila",
                "strain": "strain=DSM 105363",
                "accession": "GCA_023656545.1",
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                "species_taxid": 709888,
                "relation_to_type": "type",
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                "ani": 82.5512,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Micromonospora acroterricola",
                "strain": "strain=5R2A7",
                "accession": "GCA_003172955.1",
                "taxid": 2202421,
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                "relation_to_type": "type",
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                "matched_fragments": 862,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Micromonospora humida",
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            {
                "organism_name": "Micromonospora ferruginea",
                "strain": "strain=28ISP2-46",
                "accession": "GCA_013694245.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Micromonospora phaseoli",
                "strain": "strain=NBRC 110907",
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                "accession": "GCF_000383575.1",
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                "mean_intra_species_ani": "N/A",
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    },
    "_bac2feature": {
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}