{ "type": "genome", "identifier": "GCF_000514815.1", "organism": "Salinispora fenicalii", "title": "Salinispora fenicalii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000514815.1", "bioproject": "PRJNA224116", "biosample": "SAMN02597247", "wgs_master": "AZWQ00000000.1", "refseq_category": "reference genome", "taxid": "1137263", "species_taxid": "1137263", "organism_name": "Salinispora fenicalii", "infraspecific_name": "strain=CNT-569", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/01/07", "asm_name": "ASM51481v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000514815.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/514/815/GCF_000514815.1_ASM51481v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5234686", "genome_size_ungapped": "5232086", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "39", "contig_count": "48", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000514815.1-RS_2024_11_06", "annotation_date": "2024-11-06", "total_gene_count": "4884", "protein_coding_gene_count": "4605", "non_coding_gene_count": "90", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-01-07", "dateModified": "2014-01-07", "datePublished": "2014-01-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Salinispora fenicalii" ], "sample_taxid": [ "1137263" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.430 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5234686", "Number of Sequences": "39", "Longest Sequences (bp)": "647687", "N50 (bp)": "263022", "Gap Ratio (%)": "0.052611", "GCcontent (%)": "69.2", "Number of CDSs": "4789", "Average Protein Length": "318.3", "Coding Ratio (%)": "87.4", "Number of rRNAs": "5", "Number of tRNAs": "79", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Salinispora fenicalii", "strain": "strain=CNT-569", "accession": "GCA_000514815.1", "taxid": 1137263, "species_taxid": 1137263, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1722, "total_fragments": 1723, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Salinispora cortesiana", "strain": "strain=CNY-202", "accession": "GCA_000484695.1", "taxid": 1305843, "species_taxid": 1305843, "relation_to_type": "type", "validated": true, "ani": 93.1683, "matched_fragments": 1355, "total_fragments": 1723, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinispora mooreana", "strain": "strain=CNT-150", "accession": "GCA_000514435.1", "taxid": 999545, "species_taxid": 999545, "relation_to_type": "type", "validated": true, "ani": 92.7712, "matched_fragments": 1323, "total_fragments": 1723, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinispora mooreana", "strain": "strain=DSM 45549", "accession": "GCA_000379065.1", "taxid": 999545, "species_taxid": 999545, "relation_to_type": "type", "validated": true, "ani": 92.6559, "matched_fragments": 1341, "total_fragments": 1723, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinispora 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"accession": "GCA_000378825.1", "taxid": 999544, "species_taxid": 999544, "relation_to_type": "type", "validated": true, "ani": 91.7863, "matched_fragments": 1350, "total_fragments": 1723, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinispora vitiensis", "strain": "strain=CNT-148", "accession": "GCA_000514675.1", "taxid": 999544, "species_taxid": 999544, "relation_to_type": "type", "validated": true, "ani": 91.7752, "matched_fragments": 1348, "total_fragments": 1723, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phytophila", "strain": "strain=DSM 105363", "accession": "GCA_023656545.1", "taxid": 709888, "species_taxid": 709888, "relation_to_type": "type", "validated": true, "ani": 82.5187, "matched_fragments": 780, "total_fragments": 1723, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, 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