{ "type": "genome", "identifier": "GCF_000515335.1", "organism": "Cohnella panacarvi Gsoil 349", "title": "Cohnella panacarvi Gsoil 349", "description": "na", "data type": "Genome sequencing and assembly", "organization": "JGI", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000515335.1", "bioproject": "PRJNA224116", "biosample": "SAMN02597273", "wgs_master": "AZXQ00000000.1", "refseq_category": "reference genome", "taxid": "979226", "species_taxid": "400776", "organism_name": "Cohnella panacarvi Gsoil 349", "infraspecific_name": "strain=Gsoil 349", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/01/07", "asm_name": "ASM51533v1", "asm_submitter": "JGI", "gbrs_paired_asm": "GCA_000515335.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/515/335/GCF_000515335.1_ASM51533v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4772825", "genome_size_ungapped": "4771825", "gc_percent": "54.500000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "11", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000515335.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "4463", "protein_coding_gene_count": "4348", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-01-07", "dateModified": "2014-01-07", "datePublished": "2014-01-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Cohnella panacarvi Gsoil 349" ], "sample_taxid": [ "979226" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [ "None" ], "sample_host_disease_id": [], "sample_host_location": [ "Korea" ], "sample_host_location_id": [], "data_size": "1.342 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4772825", "Number of Sequences": "1", "Longest Sequences (bp)": "4772825", "N50 (bp)": "4772825", "Gap Ratio (%)": "0.021266", "GCcontent (%)": "54.5", "Number of CDSs": "4468", "Average Protein Length": "314.2", "Coding Ratio (%)": "88.3", "Number of rRNAs": "10", "Number of tRNAs": "56", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cohnella panacarvi", "strain": "strain=Gsoil 349", "accession": "GCA_000515335.1", "taxid": 400776, "species_taxid": 400776, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1589, "total_fragments": 1590, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cohnella candidum", "strain": "strain=18JY8-7", "accession": "GCA_003713065.1", "taxid": 2674991, "species_taxid": 2674991, "relation_to_type": "type", "validated": true, "ani": 78.4849, "matched_fragments": 373, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella terricola", "strain": "strain=G13", "accession": "GCA_007786475.1", "taxid": 1289167, "species_taxid": 1289167, "relation_to_type": "type", "validated": true, "ani": 78.4121, "matched_fragments": 378, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella cholangitidis", "strain": "strain=1605-214", "accession": "GCA_014107495.1", "taxid": 2598458, "species_taxid": 2598458, "relation_to_type": "type", "validated": true, "ani": 78.2816, "matched_fragments": 371, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella endophytica", "strain": "strain=M2MS4P-1", "accession": "GCA_003628305.1", "taxid": 2419778, "species_taxid": 2419778, "relation_to_type": "type", "validated": true, "ani": 78.275, "matched_fragments": 390, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella faecalis", "strain": "strain=K2E09-144", "accession": "GCA_003570905.1", "taxid": 2315694, "species_taxid": 2315694, "relation_to_type": "type", "validated": true, "ani": 78.2603, "matched_fragments": 343, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella luojiensis", "strain": "strain=CCTCC AB 208254", "accession": "GCA_004564235.1", "taxid": 652876, "species_taxid": 652876, "relation_to_type": "type", "validated": true, "ani": 78.0873, "matched_fragments": 333, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella lupini", "strain": "strain=CECT 8236", "accession": "GCA_003386205.1", "taxid": 1294267, "species_taxid": 1294267, "relation_to_type": "type", "validated": true, "ani": 78.0003, "matched_fragments": 351, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella herbarum", "strain": "strain=MFER-1", "accession": "GCA_012849095.1", "taxid": 2728023, "species_taxid": 2728023, "relation_to_type": "type", "validated": true, "ani": 77.983, "matched_fragments": 360, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella xylanilytica", "strain": "strain=DSM 25239", "accession": "GCA_014212175.1", "taxid": 557555, "species_taxid": 557555, "relation_to_type": "type", "validated": true, "ani": 77.9599, "matched_fragments": 388, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella fermenti", "strain": "strain=CC-MHH1044", "accession": "GCA_004801405.1", "taxid": 2565925, "species_taxid": 2565925, "relation_to_type": "type", "validated": true, "ani": 77.9472, "matched_fragments": 348, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella lubricantis", "strain": "strain=DSM 103658", "accession": "GCA_017874835.1", "taxid": 2163172, "species_taxid": 2163172, "relation_to_type": "type", "validated": true, "ani": 77.9036, "matched_fragments": 326, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella lubricantis", "strain": "strain=DSM 103658", "accession": "GCA_014212015.1", "taxid": 2163172, "species_taxid": 2163172, "relation_to_type": "type", "validated": true, "ani": 77.8933, "matched_fragments": 318, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella zeiphila", "strain": "strain=CBP-2801", "accession": "GCA_014212055.1", "taxid": 2761120, "species_taxid": 2761120, "relation_to_type": "type", "validated": true, "ani": 77.771, "matched_fragments": 339, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus algicola", "strain": "strain=HB172198", "accession": "GCA_005577435.1", "taxid": 2565926, "species_taxid": 2565926, "relation_to_type": "type", "validated": true, "ani": 77.6733, "matched_fragments": 56, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella pontilimi", "strain": "strain=CAU 1483", "accession": "GCA_005049045.1", "taxid": 2564100, "species_taxid": 2564100, "relation_to_type": "type", "validated": true, "ani": 77.6721, "matched_fragments": 265, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus artemisiicola", "strain": "strain=MWE-103", "accession": "GCA_017652985.1", "taxid": 1172618, "species_taxid": 1172618, "relation_to_type": "type", "validated": true, "ani": 77.3817, "matched_fragments": 310, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus darwinianus", "strain": "strain=Br", "accession": "GCA_000598065.1", "taxid": 1380763, "species_taxid": 1380763, "relation_to_type": "type", "validated": true, "ani": 77.2398, "matched_fragments": 150, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus macerans", "strain": "strain=ATCC 8244", "accession": "GCA_000746875.1", "taxid": 44252, "species_taxid": 44252, "relation_to_type": "type", "validated": true, "ani": 77.0448, "matched_fragments": 140, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus sinensis", "strain": "strain=HN-1", "accession": "GCA_019904155.1", "taxid": 2834413, "species_taxid": 2834413, "relation_to_type": "type", "validated": true, "ani": 76.5954, "matched_fragments": 99, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000515335.1", "gtdb_species": "s__Cohnella panacarvi", "ani": 100.0, "matched_fragments": 1588, "total_fragments": 1590, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_017874175.1", "gtdb_species": "s__Cohnella suwonensis", "ani": 78.7479, "matched_fragments": 501, "total_fragments": 1590, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003713065.1", "gtdb_species": "s__Cohnella candidum", "ani": 78.4539, "matched_fragments": 369, "total_fragments": 1590, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003001675.1", "gtdb_species": "s__Cohnella sp003001675", "ani": 78.4366, "matched_fragments": 476, "total_fragments": 1590, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_007786475.1", "gtdb_species": "s__Cohnella terricola", "ani": 78.4256, "matched_fragments": 375, "total_fragments": 1590, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014107495.1", "gtdb_species": "s__Cohnella sp014107495", "ani": 78.2969, "matched_fragments": 372, "total_fragments": 1590, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003628305.1", "gtdb_species": "s__Cohnella endophytica", "ani": 78.277, "matched_fragments": 389, "total_fragments": 1590, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003570905.1", "gtdb_species": "s__Cohnella faecalis", "ani": 78.2756, "matched_fragments": 340, "total_fragments": 1590, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014212125.1", "gtdb_species": "s__Cohnella nanjingensis", "ani": 78.2173, "matched_fragments": 395, "total_fragments": 1590, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003990975.1", "gtdb_species": "s__Cohnella sp003990975", "ani": 78.2119, "matched_fragments": 333, "total_fragments": 1590, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000429825.1", "gtdb_species": "s__Cohnella thermotolerans", "ani": 78.1332, "matched_fragments": 336, "total_fragments": 1590, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003386205.1", "gtdb_species": "s__Cohnella lupini", "ani": 78.0062, "matched_fragments": 350, "total_fragments": 1590, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012849095.1", "gtdb_species": "s__Cohnella sp012849095", "ani": 77.9795, "matched_fragments": 357, "total_fragments": 1590, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014212175.1", "gtdb_species": "s__Cohnella xylanilytica", "ani": 77.974, "matched_fragments": 388, "total_fragments": 1590, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.90", "min_intra_species_ani": "98.90", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014212015.1", "gtdb_species": "s__Cohnella lubricantis", "ani": 77.9065, "matched_fragments": 313, "total_fragments": 1590, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003208555.1", "gtdb_species": "s__Cohnella sp003208555", "ani": 77.8364, "matched_fragments": 345, "total_fragments": 1590, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014212055.1", "gtdb_species": "s__Cohnella zeiphila", "ani": 77.782, "matched_fragments": 337, "total_fragments": 1590, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.356, "cell_length": 0.316, "doubling_h": null, "growth_tmp": 30.0, "optimum_tmp": 31.714, "optimum_ph": 6.923, "genome_size": 4772325.0, "gc_content": 54.5, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 1.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Cohnella", "panacarvi", "Gsoil", "349" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }