{ "type": "genome", "identifier": "GCF_000515355.1", "organism": "Promicromonospora kroppenstedtii DSM 19349", "title": "Promicromonospora kroppenstedtii DSM 19349", "description": "na", "data type": "Genome sequencing and assembly", "organization": "JGI", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000515355.1", "bioproject": "PRJNA224116", "biosample": "SAMN02597274", "wgs_master": "AZXR00000000.1", "refseq_category": "na", "taxid": "926564", "species_taxid": "440482", "organism_name": "Promicromonospora kroppenstedtii DSM 19349", "infraspecific_name": "strain=DSM 19349", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/01/07", "asm_name": "ASM51535v1", "asm_submitter": "JGI", "gbrs_paired_asm": "GCA_000515355.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/515/355/GCF_000515355.1_ASM51535v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5802150", "genome_size_ungapped": "5651950", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "209", "contig_count": "1711", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000515355.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "6155", "protein_coding_gene_count": "5586", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-01-07", "dateModified": "2014-01-07", "datePublished": "2014-01-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Promicromonospora kroppenstedtii DSM 19349" ], "sample_taxid": [ "926564" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain" ], "sample_host_location_id": [], "data_size": "1.525 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5802150", "Number of Sequences": "209", "Longest Sequences (bp)": "336607", "N50 (bp)": "71189", "Gap Ratio (%)": "2.588713", "GCcontent (%)": "71.8", "Number of CDSs": "4864", "Average Protein Length": "310.0", "Coding Ratio (%)": "78.0", "Number of rRNAs": "4", "Number of tRNAs": "64", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Promicromonospora kroppenstedtii", "strain": "strain=DSM 19349", "accession": "GCA_000515355.1", "taxid": 440482, "species_taxid": 440482, "relation_to_type": "type", "validated": true, "ani": 99.9999, "matched_fragments": 1813, "total_fragments": 1826, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Promicromonospora sukumoe", "strain": "strain=DSM 44121", "accession": "GCA_014137995.1", "taxid": 88382, "species_taxid": 88382, "relation_to_type": "type", "validated": true, "ani": 89.6303, "matched_fragments": 1416, "total_fragments": 1826, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Promicromonospora soli", "strain": "strain=CGMCC 4.7398", "accession": "GCA_014653785.1", "taxid": 2035533, "species_taxid": 2035533, "relation_to_type": "type", "validated": true, "ani": 85.6327, "matched_fragments": 1129, "total_fragments": 1826, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Promicromonospora umidemergens", "strain": "strain=DSM 22081", "accession": "GCA_024171995.1", "taxid": 629679, "species_taxid": 629679, "relation_to_type": "type", "validated": true, "ani": 85.1815, "matched_fragments": 1246, "total_fragments": 1826, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Promicromonospora citrea", "strain": "strain=ATCC 15908", "accession": "GCA_013004695.1", "taxid": 43677, "species_taxid": 43677, "relation_to_type": "type", "validated": true, "ani": 84.8174, "matched_fragments": 1070, "total_fragments": 1826, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Promicromonospora citrea", "strain": "strain=JCM 3051", "accession": "GCA_014647735.1", "taxid": 43677, "species_taxid": 43677, "relation_to_type": "type", "validated": true, "ani": 84.7106, "matched_fragments": 1131, "total_fragments": 1826, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosimicrobium funkei", "strain": "strain=NBRC 104118", "accession": "GCA_001570825.1", "taxid": 264251, "species_taxid": 264251, "relation_to_type": "suspected-type", "validated": true, "ani": 79.0341, "matched_fragments": 694, "total_fragments": 1826, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosimicrobium funkei", "strain": "strain=JCM 14302", "accession": "GCA_004519295.1", "taxid": 264251, "species_taxid": 264251, "relation_to_type": "suspected-type", "validated": true, "ani": 78.9846, "matched_fragments": 717, "total_fragments": 1826, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia merdavium", "strain": "strain=Sa2CUA9", "accession": "GCA_014836755.1", "taxid": 2762227, "species_taxid": 2762227, "relation_to_type": "type", "validated": true, "ani": 78.7032, "matched_fragments": 625, "total_fragments": 1826, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea subterranea", "strain": "strain=HO-Ch2", "accession": "GCA_008364845.1", "taxid": 2607497, "species_taxid": 2607497, "relation_to_type": "type", "validated": true, "ani": 77.7759, "matched_fragments": 517, "total_fragments": 1826, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea solisilvae", "strain": "strain=KACC 19191", "accession": "GCA_016464425.1", "taxid": 2072922, "species_taxid": 2072922, "relation_to_type": "type", "validated": true, "ani": 77.7582, "matched_fragments": 593, "total_fragments": 1826, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas avistercoris", "strain": "strain=Sa3CUA2", "accession": "GCA_014836445.1", "taxid": 2762242, "species_taxid": 2762242, "relation_to_type": "type", "validated": true, "ani": 77.6627, "matched_fragments": 577, "total_fragments": 1826, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000515355.1", "gtdb_species": "s__Promicromonospora kroppenstedtii", "ani": 99.9999, "matched_fragments": 1813, "total_fragments": 1826, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Promicromonospora", 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