{ "type": "genome", "identifier": "GCF_000519205.1", "organism": "Amycolatopsis taiwanensis DSM 45107", "title": "Amycolatopsis taiwanensis DSM 45107", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000519205.1", "bioproject": "PRJNA224116", "biosample": "SAMN02584918", "wgs_master": "JAFB00000000.1", "refseq_category": "reference genome", "taxid": "1120984", "species_taxid": "342230", "organism_name": "Amycolatopsis taiwanensis DSM 45107", "infraspecific_name": "strain=DSM 45107", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/01/13", "asm_name": "ASM51920v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_000519205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/519/205/GCF_000519205.1_ASM51920v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8777509", "genome_size_ungapped": "8756064", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "73", "contig_count": "78", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000519205.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "8426", "protein_coding_gene_count": "8193", "non_coding_gene_count": "67", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-01-13", "dateModified": "2014-01-13", "datePublished": "2014-01-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Amycolatopsis taiwanensis DSM 45107" ], "sample_taxid": [ "1120984" ], "sample_host_organism": [], 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"status": "below_threshold" }, { "organism_name": "Amycolatopsis methanolica", "strain": "strain=239", "accession": "GCA_000739085.1", "taxid": 1814, "species_taxid": 1814, "relation_to_type": "type", "validated": true, "ani": 80.3582, "matched_fragments": 1101, "total_fragments": 2890, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis sacchari", "strain": "strain=DSM 44468", "accession": "GCA_900114035.1", "taxid": 115433, "species_taxid": 115433, "relation_to_type": "type", "validated": true, "ani": 80.2832, "matched_fragments": 1115, "total_fragments": 2890, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis acidicola", "strain": "strain=K81G1", "accession": "GCA_007713735.2", "taxid": 2596893, "species_taxid": 2596893, "relation_to_type": "type", "validated": true, "ani": 80.1528, "matched_fragments": 1128, "total_fragments": 2890, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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45648", "accession": "GCA_004365925.1", "taxid": 587909, "species_taxid": 587909, "relation_to_type": "type", "validated": true, "ani": 79.4857, "matched_fragments": 889, "total_fragments": 2890, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella cavernicola", "strain": "strain=ASG 168", "accession": "GCA_016595675.1", "taxid": 2800127, "species_taxid": 2800127, "relation_to_type": "type", "validated": true, "ani": 78.8309, "matched_fragments": 872, "total_fragments": 2890, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis camponoti", "strain": "strain=A23", "accession": "GCA_902497555.1", "taxid": 2606593, "species_taxid": 2606593, "relation_to_type": "type", "validated": true, "ani": 78.6859, "matched_fragments": 1040, "total_fragments": 2890, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix obliqua", "strain": "strain=SC076", "accession": "GCA_019375475.1", "taxid": 2861747, 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