{
    "type": "genome",
    "identifier": "GCF_000519265.1",
    "organism": "Desulfonatronum lacustre DSM 10312",
    "title": "Desulfonatronum lacustre DSM 10312",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "JGI",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000519265.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02584911",
        "wgs_master": "JAFE00000000.1",
        "refseq_category": "reference genome",
        "taxid": "935942",
        "species_taxid": "66849",
        "organism_name": "Desulfonatronum lacustre DSM 10312",
        "infraspecific_name": "strain=DSM 10312",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/01/13",
        "asm_name": "ASM51926v1",
        "asm_submitter": "JGI",
        "gbrs_paired_asm": "GCA_000519265.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/519/265/GCF_000519265.1_ASM51926v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3761451",
        "genome_size_ungapped": "3761151",
        "gc_percent": "59.500000",
        "replicon_count": "0",
        "scaffold_count": "1",
        "contig_count": "4",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000519265.1-RS_2024_07_03",
        "annotation_date": "2024-07-03",
        "total_gene_count": "3434",
        "protein_coding_gene_count": "3346",
        "non_coding_gene_count": "65",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-01-13",
    "dateModified": "2014-01-13",
    "datePublished": "2014-01-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Desulfonatronum lacustre DSM 10312"
        ],
        "sample_taxid": [
            "935942"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "None"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Russia"
        ],
        "sample_host_location_id": [],
        "data_size": "1.054 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3761451",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3761451",
        "N50 (bp)": "3761451",
        "Gap Ratio (%)": "0.009092",
        "GCcontent (%)": "59.3",
        "Number of CDSs": "3413",
        "Average Protein Length": "324.6",
        "Coding Ratio (%)": "88.3",
        "Number of rRNAs": "9",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Desulfonatronum lacustre",
                "strain": "strain=DSM 10312",
                "accession": "GCA_000519265.1",
                "taxid": 66849,
                "species_taxid": 66849,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1253,
                "total_fragments": 1253,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Desulfonatronum thiodismutans",
                "strain": "strain=MLF-1",
                "accession": "GCA_000717475.2",
                "taxid": 159290,
                "species_taxid": 159290,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.6453,
                "matched_fragments": 958,
                "total_fragments": 1253,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfonatronum thioautotrophicum",
                "strain": "strain=ASO4-1",
                "accession": "GCA_000934745.1",
                "taxid": 617001,
                "species_taxid": 617001,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.767,
                "matched_fragments": 752,
                "total_fragments": 1253,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfonatronum thiosulfatophilum",
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                "accession": "GCA_900104215.1",
                "taxid": 617002,
                "species_taxid": 617002,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.235,
                "matched_fragments": 582,
                "total_fragments": 1253,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Megalodesulfovibrio gigas",
                "strain": "strain=DSM 1382",
                "accession": "GCA_000429285.1",
                "taxid": 879,
                "species_taxid": 879,
                "relation_to_type": "type",
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                "ani": 76.897,
                "matched_fragments": 139,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfomicrobium apsheronum",
                "strain": "strain=DSM 5918",
                "accession": "GCA_900114115.1",
                "taxid": 52560,
                "species_taxid": 52560,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.533,
                "matched_fragments": 109,
                "total_fragments": 1253,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fundidesulfovibrio putealis",
                "strain": "strain=DSM 16056",
                "accession": "GCA_000429325.1",
                "taxid": 270496,
                "species_taxid": 270496,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5075,
                "matched_fragments": 159,
                "total_fragments": 1253,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fundidesulfovibrio magnetotacticus",
                "strain": "strain=FSS-1",
                "accession": "GCA_013019105.1",
                "taxid": 2730080,
                "species_taxid": 2730080,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4322,
                "matched_fragments": 183,
                "total_fragments": 1253,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfomicrobium escambiense",
                "strain": "strain=DSM 10707",
                "accession": "GCA_000428825.1",
                "taxid": 29503,
                "species_taxid": 29503,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4277,
                "matched_fragments": 172,
                "total_fragments": 1253,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfovibrio piger",
                "strain": "strain=ATCC 29098",
                "accession": "GCA_000156375.1",
                "taxid": 901,
                "species_taxid": 901,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.4272,
                "matched_fragments": 71,
                "total_fragments": 1253,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudodesulfovibrio tunisiensis",
                "strain": "strain=RB22",
                "accession": "GCA_022809775.1",
                "taxid": 463192,
                "species_taxid": 463192,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3469,
                "matched_fragments": 113,
                "total_fragments": 1253,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_000519265.1",
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                "ani": 100.0,
                "matched_fragments": 1253,
                "total_fragments": 1253,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfonatronaceae;g__Desulfonatronum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000717475.1",
                "gtdb_species": "s__Desulfonatronum thiodismutans",
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                "matched_fragments": 954,
                "total_fragments": 1253,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfonatronaceae;g__Desulfonatronum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_007127655.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfonatronaceae;g__Desulfonatronum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCF_003046795.1",
                "gtdb_species": "s__Desulfonatronum sp003046795",
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfonatronaceae;g__Desulfonatronum",
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            },
            {
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                "mean_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
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                "mean_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCF_900104215.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfonatronaceae;g__Desulfonatronum",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.285,
        "cell_length": 0.161,
        "doubling_h": null,
        "growth_tmp": 32.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 8.5,
        "genome_size": 3761301.0,
        "gc_content": 59.3,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "sporulation": 0.0,
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        "range_salinity": null,
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        "mesophilic_range_tmp": 1.0,
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        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.5,
        "spiral_cell_shape": 0.5
    },
    "_genome_taxon": [
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        "lacustre",
        "DSM",
        "10312"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}