{ "type": "genome", "identifier": "GCF_000520835.1", "organism": "Chryseobacterium indologenes NBRC 14944", "title": "Chryseobacterium indologenes NBRC 14944", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_000520835.1", "bioproject": "PRJNA224116", "biosample": "SAMD00041821", "wgs_master": "BAVL00000000.1", "refseq_category": "na", "taxid": "1218103", "species_taxid": "253", "organism_name": "Chryseobacterium indologenes NBRC 14944", "infraspecific_name": "strain=NBRC 14944", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2014/01/10", "asm_name": "ASM52083v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_000520835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/520/835/GCF_000520835.1_ASM52083v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4753942", "genome_size_ungapped": "4753942", "gc_percent": "37.000000", "replicon_count": "0", "scaffold_count": "33", "contig_count": "33", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_000520835.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "4344", "protein_coding_gene_count": "4251", "non_coding_gene_count": "72", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2014-01-10", "dateModified": "2014-01-10", "datePublished": "2014-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium indologenes NBRC 14944" ], "sample_taxid": [ "1218103" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.338 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4753942", "Number of Sequences": "33", "Longest Sequences (bp)": "675403", "N50 (bp)": "371052", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.2", "Number of CDSs": "4186", "Average Protein Length": "327.5", "Coding Ratio (%)": "86.5", "Number of rRNAs": "3", "Number of tRNAs": "69", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium indologenes", "strain": "strain=NBRC 14944", "accession": "GCA_000520835.1", "taxid": 253, "species_taxid": 253, 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1570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium contaminans", "strain": "strain=DSM 27621", "accession": "GCA_900142615.1", "taxid": 1423959, "species_taxid": 1423959, "relation_to_type": "type", "validated": true, "ani": 82.8868, "matched_fragments": 1003, "total_fragments": 1570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium viscerum", "strain": "strain=687B-08", "accession": "GCA_002899945.2", "taxid": 1037377, "species_taxid": 1037377, "relation_to_type": "type", "validated": true, "ani": 82.5071, "matched_fragments": 1049, "total_fragments": 1570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium vaccae", "strain": "strain=CA7", "accession": "GCA_009602705.1", "taxid": 2604424, "species_taxid": 2604424, "relation_to_type": "type", "validated": true, "ani": 81.2383, "matched_fragments": 852, "total_fragments": 1570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gwangjuense", "strain": "strain=THG-A18", "accession": "GCA_021311115.1", "taxid": 1069980, "species_taxid": 1069980, "relation_to_type": "type", "validated": true, "ani": 80.321, "matched_fragments": 645, "total_fragments": 1570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 80.2057, "matched_fragments": 679, "total_fragments": 1570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ginsenosidimutans", "strain": "strain=THG 15", "accession": "GCA_024807225.1", "taxid": 687846, "species_taxid": 687846, "relation_to_type": "type", "validated": true, "ani": 80.0461, "matched_fragments": 689, "total_fragments": 1570, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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