{
    "type": "genome",
    "identifier": "GCF_000521465.1",
    "organism": "Acetivibrio straminisolvens JCM 21531",
    "title": "Acetivibrio straminisolvens JCM 21531",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "The University of Tokyo",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_000521465.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00000544",
        "wgs_master": "BAVR00000000.1",
        "refseq_category": "na",
        "taxid": "1294263",
        "species_taxid": "253314",
        "organism_name": "Acetivibrio straminisolvens JCM 21531",
        "infraspecific_name": "strain=JCM 21531",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2014/01/20",
        "asm_name": "ASM52146v1",
        "asm_submitter": "The University of Tokyo",
        "gbrs_paired_asm": "GCA_000521465.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/521/465/GCF_000521465.1_ASM52146v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3907117",
        "genome_size_ungapped": "3907117",
        "gc_percent": "38.500000",
        "replicon_count": "0",
        "scaffold_count": "195",
        "contig_count": "195",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_000521465.1-RS_2024_08_08",
        "annotation_date": "2024-08-08",
        "total_gene_count": "4042",
        "protein_coding_gene_count": "3314",
        "non_coding_gene_count": "59",
        "pubmed_id": "24558248"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2014-01-20",
    "dateModified": "2014-01-20",
    "datePublished": "2014-01-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Acetivibrio straminisolvens JCM 21531"
        ],
        "sample_taxid": [
            "1294263"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.107 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3907117",
        "Number of Sequences": "195",
        "Longest Sequences (bp)": "125509",
        "N50 (bp)": "48174",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "38.3",
        "Number of CDSs": "4345",
        "Average Protein Length": "247.5",
        "Coding Ratio (%)": "82.6",
        "Number of rRNAs": "2",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "11"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Acetivibrio straminisolvens",
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                "species_taxid": 253314,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1208,
                "total_fragments": 1214,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Acetivibrio mesophilus",
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                "accession": "GCA_004102745.1",
                "taxid": 2487273,
                "species_taxid": 2487273,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.4191,
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                "total_fragments": 1214,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acetivibrio thermocellus",
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                "accession": "GCA_000015865.1",
                "taxid": 1515,
                "species_taxid": 1515,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.3425,
                "matched_fragments": 913,
                "total_fragments": 1214,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acetivibrio saccincola",
                "strain": "strain=GGR1",
                "accession": "GCA_002844395.1",
                "taxid": 1677857,
                "species_taxid": 1677857,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1524,
                "matched_fragments": 124,
                "total_fragments": 1214,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ruminiclostridium sufflavum",
                "strain": "strain=DSM 19573",
                "accession": "GCA_003208175.1",
                "taxid": 396504,
                "species_taxid": 396504,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7196,
                "matched_fragments": 52,
                "total_fragments": 1214,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_000521465.1",
                "gtdb_species": "s__Hungateiclostridium straminisolvens",
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                "matched_fragments": 1208,
                "total_fragments": 1214,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Acetivibrionales;f__Acetivibrionaceae;g__Hungateiclostridium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.73",
                "min_intra_species_ani": "99.73",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_004102745.1",
                "gtdb_species": "s__Hungateiclostridium mesophilum",
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                "matched_fragments": 945,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Acetivibrionales;f__Acetivibrionaceae;g__Hungateiclostridium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.61",
                "min_intra_species_ani": "99.52",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000015865.1",
                "gtdb_species": "s__Hungateiclostridium thermocellum",
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                "matched_fragments": 912,
                "total_fragments": 1214,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Acetivibrionales;f__Acetivibrionaceae;g__Hungateiclostridium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.61",
                "min_intra_species_ani": "99.46",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 14,
                "status": "-"
            },
            {
                "accession": "GCF_002844395.1",
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                "ani": 79.2286,
                "matched_fragments": 122,
                "total_fragments": 1214,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Acetivibrionales;f__Acetivibrionaceae;g__Herbivorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.55",
                "min_intra_species_ani": "99.29",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_001512505.1",
                "gtdb_species": "s__Hungateiclostridium sp001512505",
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                "matched_fragments": 321,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Acetivibrionales;f__Acetivibrionaceae;g__Hungateiclostridium",
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                "mean_intra_species_ani": "99.73",
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                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_012523755.1",
                "gtdb_species": "s__Hungateiclostridium sp012523755",
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                "matched_fragments": 249,
                "total_fragments": 1214,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Acetivibrionales;f__Acetivibrionaceae;g__Hungateiclostridium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_012517995.1",
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                "matched_fragments": 101,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Acetivibrionales;f__Acetivibrionaceae;g__Herbivorax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000179595.2",
                "gtdb_species": "s__Acetivibrio cellulolyticus",
                "ani": 77.1474,
                "matched_fragments": 133,
                "total_fragments": 1214,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Acetivibrionales;f__Acetivibrionaceae;g__Acetivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003208175.1",
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                "ani": 75.7227,
                "matched_fragments": 52,
                "total_fragments": 1214,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Acetivibrionales;f__DSM-27016;g__Ruminiclostridium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.412,
        "cell_length": 0.238,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 35.0,
        "optimum_ph": null,
        "genome_size": 4895402.0,
        "gc_content": 35.54,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Acetivibrio",
        "straminisolvens",
        "JCM",
        "21531"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}